Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00378 ATGGCAACTGGGGTATTCATTAATAAACCCCCTTCACTTCCTCCGTACCCCGAGATGATTTTGGAGGCAATTGAAGCACTGAATGAAGACAATGGTTCTAATAAATCATCAATTTCGAAGTACATAGAATCTACCTACGGTGGATTACCTCAGGGCCACAAGGTTTTGCTCAATGTGCACCTCGCGAAAATGAGGGACAGTGGAGTGTTAGTGTTTTGGAAGAACAACTACACCAAGCGTGACCCAAAGGCGCCGCCAAGGCGTGGCCGTGGCAGGCCACCCAAGCCCAAGGAGCCTCTGCCACCGGGCACTGTCTTGTCACCGCCCAGGCCCAAGGGCCGTCCTCCGAAGGACCCGAATGACCCAGGGAAGCCACCTAAGGCCTTGACAGAAAGTGGCAGGCCCAGAGGCCGGCCCAGGAAGATGACCCGGCCCACTGGTGGACTTAGCGAAGCATCGCCAGCCTCCAAGGTGAAGGCTTCCACCAGTGGGAGGCCTAGAGGTAGACCTCCCAAAGTGAAGCCCGTGTTTACTGAAATAAGTGCTTAA 549 0.5446 MATGVFINKPPSLPPYPEMILEAIEALNEDNGSNKSSISKYIESTYGGLPQGHKVLLNVHLAKMRDSGVLVFWKNNYTKRDPKAPPRRGRGRPPKPKEPLPPGTVLSPPRPKGRPPKDPNDPGKPPKALTESGRPRGRPRKMTRPTGGLSEASPASKVKASTSGRPRGRPPKVKPVFTEISA 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00378 182 PANTHER HMG-Y-RELATED PROTEIN A 6 179 IPR031059 GO:0003677|GO:0005634
Gma18g00378 182 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma18g00378 182 PANTHER HISTONE H1 6 179 - -
Gma18g00378 182 MobiDBLite consensus disorder prediction 78 182 - -
Gma18g00378 182 MobiDBLite consensus disorder prediction 96 113 - -
Gma18g00378 182 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma18g00378 182 MobiDBLite consensus disorder prediction 80 95 - -
Gma18g00378 182 CDD H15 10 71 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma18g00378 182 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma18g00378 182 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Gma18g00378 182 SMART AT_hook_2 164 176 IPR017956 GO:0003677
Gma18g00378 182 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Gma18g00378 182 SMART AT_hook_2 133 145 IPR017956 GO:0003677
Gma18g00378 182 Gene3D - 8 89 IPR036388 -
Gma18g00378 182 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Gma18g00378 182 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Gma18g00378 182 PRINTS AT-hook-like domain signature 131 141 IPR017956 GO:0003677
Gma18g00378 182 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00378 Gma-Chr18 3356119 3357431 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00378 - - gmx:100803968 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00378 18 3356119 3357431 Gma18g00378 18 3356119 3357431 ECH
Gma18g00378 18 3356119 3357431 Gma11g02190 11 37099165 37100470 GST
Gma18g00378 18 3356119 3357431 Gma14g02095 14 52074843 52076193 PCT
Gma18g00378 18 3356119 3357431 Gma02g02317 02 49260995 49262746 PCT