Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02190 ATGGCAACTGGGCAAGTCATTAATAAACCTCCTTCACTTCCTCCGTACCCTGAGATGATTCGGGAGGCAATTGAAGCACTGAATGAAGAGAATGGTTCGAATAAATCATCAATTTCGAAGTACATCGAATCCACCTATGGTGGATTGCCTCAGGCCCACAAGGTTTTGCTCAATGTGCACCTCGCGAAAATGAGGGAAAGTGGAGTGCTAGTGTTTTGGAAGAACAACTACACCAAGCGTGACCCAAATGCGCCGCCACGGCGGGGCCGTGGCAGGCCACCCAAGCCCAAGGAGCCTCTGCCACCGGGCACTGTCTTATCACCGCCCAGGCCCAGGGGCCGTCCTTCGAAGGACCCAAATGACCTGCAGAAGCCTCTTAAGGCTTCGGTGGTGGGTAGTGGTAGGCCTCGAGGCCGGCCCAGAAAAATGGCCTGGCCCACTGGAGGCCTTGGTGAAGTATCGCAGGCCTCTAAGGCGAAGCCTGTCACTAGTAATGGGAGGCCTAGAGGTAGGCCTCCCAAAGTGAAGGCCGTATTCACTGAAATTAGTGTTTGA 555 0.5423 MATGQVINKPPSLPPYPEMIREAIEALNEENGSNKSSISKYIESTYGGLPQAHKVLLNVHLAKMRESGVLVFWKNNYTKRDPNAPPRRGRGRPPKPKEPLPPGTVLSPPRPRGRPSKDPNDLQKPLKASVVGSGRPRGRPRKMAWPTGGLGEVSQASKAKPVTSNGRPRGRPPKVKAVFTEISV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02190 184 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Gma11g02190 184 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Gma11g02190 184 SMART AT_hook_2 166 178 IPR017956 GO:0003677
Gma11g02190 184 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Gma11g02190 184 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma11g02190 184 MobiDBLite consensus disorder prediction 81 95 - -
Gma11g02190 184 PANTHER HMG-Y-RELATED PROTEIN A 1 180 IPR031059 GO:0003677|GO:0005634
Gma11g02190 184 Gene3D - 8 87 IPR036388 -
Gma11g02190 184 MobiDBLite consensus disorder prediction 96 113 - -
Gma11g02190 184 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma11g02190 184 CDD H15 10 71 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma11g02190 184 Pfam AT hook motif 134 144 IPR017956 GO:0003677
Gma11g02190 184 Pfam AT hook motif 166 176 IPR017956 GO:0003677
Gma11g02190 184 Pfam AT hook motif 109 120 IPR017956 GO:0003677
Gma11g02190 184 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Gma11g02190 184 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Gma11g02190 184 PRINTS AT-hook-like domain signature 132 142 IPR017956 GO:0003677
Gma11g02190 184 PANTHER HISTONE H1 1 180 - -
Gma11g02190 184 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
Gma11g02190 184 MobiDBLite consensus disorder prediction 77 184 - -
Gma11g02190 184 PRINTS High mobility group protein (HMGY) signature 85 97 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Gma11g02190 184 PRINTS High mobility group protein (HMGY) signature 109 120 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Gma11g02190 184 PRINTS High mobility group protein (HMGY) signature 123 142 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Gma11g02190 184 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02190 Gma-Chr11 37099165 37100470 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02190 - - gmx:100804682 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00378 18 3356119 3357431 Gma11g02190 11 37099165 37100470 GST
Gma11g02190 11 37099165 37100470 Gma14g02095 14 52074843 52076193 PCT
Gma11g02190 11 37099165 37100470 Gma02g02317 02 49260995 49262746 PCT