Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00182 ATGGACACGCGCGGCCACGATGAGGAGGAGCCACCGAAACCTGTGGTTCTGATCACAGGATGTTCCACGGGAGGGATAGGCCACGCGCTTGCACGCGCCTTCGCTGAGAAGAAGTGCAGGGTGGTGGCCACCAGCAGGTCGCGGTCGAGCATGGCGGAGCTGGAACACGACCAAAGGTTCTTTTTGGAAGAGTTGGATGTTCAGTCCGATGAGAGCGTGCGTAAGGTGGTTGATGCTGTTGTCGACAAGTACGGTCGCATCGACGTGCTCGTtaacaacgccggtgttcagtgtgtgggcccactcgccgaggttcctctctctgccatccaaaacactttcgacaccaatgttttcggttccttgagaatggttcaggcggttgttcctcatatggcaactaagaaaaaggggaagattgtcaatattggtagtgttgctgccttggcctctggaccttggtcaggagcttatacagcttctaaagctgctcttcatgctttgacagatacattaagactggaacttggacattttggaattgatgttgtcaatattgtccccggagctatcaaatcaaacattggagattctgccatagccagctacaaccgcatgccagaatggaaattattcaagccttttgaagcagcaatcCGAGATAGAGCTTATTTTTCTCAGAAGTCCAAAACAACCCCTACAGATGAGTTTGCTATAAGCACTGTAGCTGCTGTCCTTaaggagaaaccacctgcatggttcacctatgggcattactctactgtcatggctatcatgtatcatttaccgatctctgttagagattttgttttgaagaaagcaatgaaaggctga 855 0.2269 MDTRGHDEEEPPKPVVLITGCSTGGIGHALARAFAEKKCRVVATSRSRSSMAELEHDQRFFLEELDVQSDESVRKVVDAVVDKYGRIDVLVNNAGVQCVGPLAEVPLSAIQNTFDTNVFGSLRMVQAVVPHMATKKKGKIVNIGSVAALASGPWSGAYTASKAALHALTDTLRLELGHFGIDVVNIVPGAIKSNIGDSAIASYNRMPEWKLFKPFEAAIRDRAYFSQKSKTTPTDEFAISTVAAVLKEKPPAWFTYGHYSTVMAIMYHLPISVRDFVLKKAMKG 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00182 284 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 194 - -
Gma18g00182 284 Gene3D - 14 274 - -
Gma18g00182 284 CDD 17beta-HSD-like_SDR_c 15 260 - -
Gma18g00182 284 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 145 173 IPR020904 GO:0016491
Gma18g00182 284 PANTHER BNAANNG04690D PROTEIN 13 282 - -
Gma18g00182 284 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 13 282 - -
Gma18g00182 284 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Gma18g00182 284 PRINTS Glucose/ribitol dehydrogenase family signature 158 177 IPR002347 -
Gma18g00182 284 PRINTS Glucose/ribitol dehydrogenase family signature 179 196 IPR002347 -
Gma18g00182 284 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Gma18g00182 284 PRINTS Glucose/ribitol dehydrogenase family signature 132 148 IPR002347 -
Gma18g00182 284 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Gma18g00182 284 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 IPR002347 -
Gma18g00182 284 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 IPR002347 -
Gma18g00182 284 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 268 IPR036291 -
Gma18g00182 284 Pfam short chain dehydrogenase 15 198 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00182 Gma-Chr18 1499121 1501710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g00182 10 195 Acyl Lipid Metabolism Gene Families AT3G55310 33.333 1.39e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00182 - - gmx:100789660 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00182 18 1499121 1501710 Gma11g02390 11 39263898 39272751 GST