Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02390 ATGTGTATGGAGAAGCACGGCCATGATGAGGAGGAGCAACCCAAACCTGTGGTTCTAATCACAGGATGTTCCACGGGAGGGATAGGCCACGCGCTTGCACGATCCTTCGCAGCGAACAGGTGCAGGGTGGTGGCCACCAGCAGGTCGCGGTGGAGCATGGCGGATCTGGAACACGACCACAGGTTCTTCTTGCAAGAATTGGATGTTCAGTCCGATGAGAGCGTGCGTAAGGTGGTCGATGCTGTTGTCAACAAGTTCGGTCGCATCGACGTGCTTGTtaacaacgctggtgttcagtgtgtgggcccccttgccgaggttcctctctctgccattcaaaacactttcgataccaatgtcttcggttcgttgagaatgattcaggccgttgttcctcatatggctgttaggaaacaggggaagatagtcaacgttggtagcgttgctgccttggcctctggaccttggtcaggcacttacaatgcttccaaagctgctcttcatgctttcactgatacattaagattggaacttggacactttggaatcgacgttgtgaatgtagttcctggagccatcacttccaatattgcaaataatgcccttgccaattacaatcgaatgcctgaatggaagttattcaagccttttgaagcagcaatcCGAGACAGAGCTTCTTTGTCTCAGGGGTCCAAGTCGACCCCTTCGGAGGAGTTTGCTAAAAACACAGTAGCAGCTGTTCTTaagaagaatccacctgcatgTTTACAGCTATCGAAGATGGCTCCTCCCAGAGGTCGTGGTGGTTTTGGTGGTGGTGGTGGTGGTGGGTTCAGGGGTGGTGGTAGGGGTGACAGAGGCAGAGGAAGGGGCGGTGGAGGAAGAGGAGGAGACAGAGGTACACCCTTCAAAGCTAGAGGCGGTGGTAGAGGTggtggaggccgtggaggaggcaggggtggtggccgtggcggtggcagaggtggaATGAAGGGTGGTAGCAAGGTTGTTGTTCAGCCCCATAGACATGACGGTATTTTCATTGCCAAGGGTAAAGAAGATGCTCTCGTTACCAAGAATCTTGTTCCCGGTGAAGCTGTTTACAATGAGAAAAGGATTACTGTTCAGAATGAAGATGGTACCAAAGAGGAGTACAGAGTTTGGAATCCTTTCCGATCCAAGTTGGCTGCTGCCATCCTTGGTGGAGTTGACAACATATGGATTAAACCCGGAGCCAGAGTCCTTTACCTTGGAGCTGCTTCTGGGACCACTGTTTCTCATGTGTCGGACGTTGTTGGCCCTACTGGAGTTGTCTATGCAgtagaattttcccatagaagtggacgtgacttggtcaatatggcaaagaaaagaactaacgttatacccattattgaagatgctagacatccagctaaatacaggatgttggttggaatggttgatgtcatattttctgatgttgctcaacctgatcagGCTAGGATTTTGGGGCTGAATGCTTCATATTATCTGAAAACAGGAGGTCATTTTGTTATTTCAATCAAGGCTAACTGCATAGACTCCACAGTCCCTGCTGAGGCAGTGTTTGAAAGCGAAGTGAACAAGTTGAAGGCAGATCAATTCAAACCATTCGAGCAAGTCACCCTTGAACCATTTGAGAGGGACCATGCCTGTGTGGTTGGTGGATACAGAATGCCCAAGAAGAAAAAAGATGCTGCTGAGTAG 1728 0.3247 MCMEKHGHDEEEQPKPVVLITGCSTGGIGHALARSFAANRCRVVATSRSRWSMADLEHDHRFFLQELDVQSDESVRKVVDAVVNKFGRIDVLVNNAGVQCVGPLAEVPLSAIQNTFDTNVFGSLRMIQAVVPHMAVRKQGKIVNVGSVAALASGPWSGTYNASKAALHAFTDTLRLELGHFGIDVVNVVPGAITSNIANNALANYNRMPEWKLFKPFEAAIRDRASLSQGSKSTPSEEFAKNTVAAVLKKNPPACLQLSKMAPPRGRGGFGGGGGGGFRGGGRGDRGRGRGGGGRGGDRGTPFKARGGGRGGGGRGGGRGGGRGGGRGGMKGGSKVVVQPHRHDGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQNEDGTKEEYRVWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKTGGHFVISIKANCIDSTVPAEAVFESEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDAAE 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02390 575 Pfam short chain dehydrogenase 17 202 IPR002347 -
Gma11g02390 575 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 270 573 - -
Gma11g02390 575 SMART Fibrillarin_2 338 566 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma11g02390 575 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 147 175 IPR020904 GO:0016491
Gma11g02390 575 Gene3D Vaccinia Virus protein VP39 389 566 IPR029063 -
Gma11g02390 575 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 16 191 - -
Gma11g02390 575 Pfam Fibrillarin 338 565 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma11g02390 575 Gene3D - 16 264 - -
Gma11g02390 575 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 203 IPR036291 -
Gma11g02390 575 MobiDBLite consensus disorder prediction 260 334 - -
Gma11g02390 575 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 336 562 IPR029063 -
Gma11g02390 575 Gene3D Phosphorylase Kinase; domain 1 333 388 - -
Gma11g02390 575 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 270 573 - -
Gma11g02390 575 CDD 17beta-HSD-like_SDR_c 17 262 - -
Gma11g02390 575 ProSitePatterns Fibrillarin signature. 436 450 IPR020813 GO:0003723|GO:0006364|GO:0008168
Gma11g02390 575 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 352 565 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma11g02390 575 PRINTS Fibrillarin signature 491 520 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma11g02390 575 PRINTS Fibrillarin signature 543 564 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma11g02390 575 PRINTS Fibrillarin signature 356 375 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma11g02390 575 PRINTS Fibrillarin signature 384 403 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma11g02390 575 PRINTS Fibrillarin signature 436 453 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma11g02390 575 PRINTS Fibrillarin signature 411 432 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma11g02390 575 PRINTS Fibrillarin signature 461 490 IPR000692 GO:0003723|GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02390 Gma-Chr11 39263898 39272751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02390 12 199 Acyl Lipid Metabolism Gene Families AT1G62610 30.846 5.75e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02390 K14563 - gmx:100814656 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00182 18 1499121 1501710 Gma11g02390 11 39263898 39272751 GST