LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma18g00114	ATGGGAGAAACCGGGATCATTGTCAGCTTCCAGGGTAACTTAGACCCGAGAGCAGAGGAGTTCAGACCCCTCAATCTTCAATGCCAATGGTATCCTCTTCCTCTTCCCACACCCCTCTCCAcctcctccacccgctccctcctcctcactccgctcccATTCACCTCCCACTCCGCCCTCCGCGCAGAACTCCAGGCCTTCGGCGACATCAGAGCCCTCCAAACCGACTCCCTCCGCCACGGCATCCTCACCGTCCACTTCTTCGACCTCCGCCATGCAGAGTCCGCCTTCGCCGCCATCCGCTCCATGCACCTCCATTTCCCTCAATTCCTCCTCTCGGCCCACCCCATCTCCGCCCACTACGTCCTCCCTTCCTCCAACGCCTTCCCCGACGCCCACAACCAAGGCACCCTCGTCATCTTCAACCTCCACCCCAACCTCTCCACCGTCCAACTCCGTCGTCTCTTCCAACCTTTCGGTCCCATAAAGGAATTGAGAGATACCCCATGGAAAAAGAATCAGAGATTTGTGGAGTTCTTCGACATAAGAGACGCCGCCAAGGCCTTGAAGCACATGAACGGCAAGGAAATTCACGGCAAACAGGTTGTGATTGAGTTCAGTAGACCCGGTGGTCACACCCGCAAGTTCTTCCATCATTCTCCTCCTTCCGAAACCACACCTTTCAACGTTCCTCCGCCACCACCACCGTTTCCTCCTTCCCCGCGACGTCGTTTTGCTGCTCCTCGCTTGCATTCCTCTCAAAAGAAATCACCGGGAAGCCACAAGAGTACGGGATCTATTGATGCGGAAATGGGATCAATGAGTTTGACCGGAGAAGTTGAAGTTCAGCATTCTTCACATGGCCCCACACAGAGGAATCTTAGCAGAAAGCACAATTGCGATACCACTGTAGTAGTAGGAACCACCACCAAGCAGCAGCAGCAGCAACAACAACAACAACAAGTACCTAGAAGTAGGCACTGGAAGGGAAAACAAGCGAAGAAACAAGAAACTAGGTTTCTAATCAAAGAGGGTGCCATTGTAGAATCTGGTCCCAAAGATACTAGAACTACTGTCATGATCAAAAACATTCCCAACAAGTATAGTCAGAAGTTGCTATTAAACATGCTGGATAACCACTGCAGACACTGCAACGAGCAGATTGCAGACGGCGATGAGCAGCAGCCTCTATCCTCCTACGACTTCGTGTACCTTCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGTTTTGTGAACATGACTTCCACGGAGGCAACACTCAGGCTCCACAAGGCCTTCCATCTTCAACATTGGGAGGTTTTCAATTCAAGAAAAATCTGCGAAGTCACCTATGCTAGAGTTCAGGGATTGGAAGCATTGAAAGAGCACTTCAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACTTACCAGTGGTGTTTTCGCCGCCTCGAGATGGGAAAGAACTGACGGAGCCACTTCCAATAGTGGGGAACAAGCAACAACAACAAGCCATATCAAGTGGCGGCGGCGGCAGCGGCAGCGTAGGTGATGATGATGAGACAAATGAAGAAGTGGGTAGTAGTGTTGTGATTCTGAAAGACAGCATTTAA	1620	0.4969	MGETGIIVSFQGNLDPRAEEFRPLNLQCQWYPLPLPTPLSTSSTRSLLLTPLPFTSHSALRAELQAFGDIRALQTDSLRHGILTVHFFDLRHAESAFAAIRSMHLHFPQFLLSAHPISAHYVLPSSNAFPDAHNQGTLVIFNLHPNLSTVQLRRLFQPFGPIKELRDTPWKKNQRFVEFFDIRDAAKALKHMNGKEIHGKQVVIEFSRPGGHTRKFFHHSPPSETTPFNVPPPPPPFPPSPRRRFAAPRLHSSQKKSPGSHKSTGSIDAEMGSMSLTGEVEVQHSSHGPTQRNLSRKHNCDTTVVVGTTTKQQQQQQQQQQVPRSRHWKGKQAKKQETRFLIKEGAIVESGPKDTRTTVMIKNIPNKYSQKLLLNMLDNHCRHCNEQIADGDEQQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSTEATLRLHKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKELTEPLPIVGNKQQQQAISSGGGGSGSVGDDDETNEEVGSSVVILKDSI	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma18g00114	539	MobiDBLite	consensus disorder prediction	253	269	-	-
	Gma18g00114	539	MobiDBLite	consensus disorder prediction	499	513	-	-
	Gma18g00114	539	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	138	202	IPR000504	GO:0003723
	Gma18g00114	539	CDD	RRM3_EAR1_like	356	458	IPR034458	-
	Gma18g00114	539	MobiDBLite	consensus disorder prediction	279	298	-	-
	Gma18g00114	539	MobiDBLite	consensus disorder prediction	225	243	-	-
	Gma18g00114	539	MobiDBLite	consensus disorder prediction	307	326	-	-
	Gma18g00114	539	SMART	rrm1_1	137	205	IPR000504	GO:0003723
	Gma18g00114	539	MobiDBLite	consensus disorder prediction	499	531	-	-
	Gma18g00114	539	MobiDBLite	consensus disorder prediction	307	336	-	-
	Gma18g00114	539	MobiDBLite	consensus disorder prediction	211	269	-	-
	Gma18g00114	539	PANTHER	TERMINAL EAR1-LIKE 1	34	513	-	-
	Gma18g00114	539	Gene3D	-	302	463	IPR012677	-
	Gma18g00114	539	PANTHER	RNA BINDING PROTEIN	34	513	-	-
	Gma18g00114	539	Pfam	RNA recognition motif 2	356	467	IPR007201	-
	Gma18g00114	539	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	136	209	IPR000504	GO:0003723
	Gma18g00114	539	SUPERFAMILY	RNA-binding domain, RBD	137	436	IPR035979	GO:0003676
	Gma18g00114	539	Gene3D	-	130	216	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma18g00114	Gma-Chr18	914500	917446	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma18g00114	-		-	gmx:100803603	963.755

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma18g00114	18	914500	917446	Gma18g00114	18	914500	917446	ECH
	Gma18g00114	18	914500	917446	Gma11g02461	11	39902590	39904914	GST