Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02292 ATGGGTTCTTCTTCTATTACAACATCGCCCGCAACCATGACCATGGCTGCGATCGTGCTCCTGTTCACGGTCTTTGCCGTTTCCTCCGCCCTAGACATGTCGATAATCTCGTACGACAGCGCCCACGCGGACAAGGCCGCCACGTTGCGCACCGAGGAGGAGCTGATGTCCATGTACGAGCAGTGGCTCGTGAAGCACGGGAAGGTGTACAACGCGCTCGGCGAGAAGGAGAAGCGCTTCCAGATCTTCAAGGACAACCTGCGATTCATCGACGACCACAACTCCGCGGAGGACCGAACCTACAAGCTCGGACTGAACCGGTTCGCTGATCTCACCAACGAGGAATACAGGGCCAAGTACTTGGGAACCAAGATCGATCCCAACCGGAGGCTCGGAAAGACCCCGAGCAACCGCTACGCGCCACGTGTCGGCGACAAATTGCCTGATTCCGTTGATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAGATAGTAACAGGCGAACTGATTTCGTTATCAGAACAAGAATTGGTGGATTGTGATACTGGATATAACCAAGGATGCAATGGAGGACTTATGGACTATGCATTTGAGTTCATAATCAACAATGGCGGCATTGATTCTGATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTATGATGAGTTAGCCTTGAAAAAGGCCGTTGCAAATCAGCCCGTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCTGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCTGTTGGGTATGGAACAGCTAAAGGTCATGATTATTGGATCGTAAGGAATTCATGGGGTTCTAGCTGGGGAGAGGATGGCTACATCAGATTAGAAAGAAATCTTGCTAACAGCAGATCAGGCAAGTGTGGAATTGCAATTGAGCCATCTTATCCCCTTAAGAATGGTCCAAATCCCCCTAATCCTGGACCATCACCCCCTTCACCTGTGAAGCCGCCAAATGTCTGTGACAACTACTACAGCTGTGCTGATAGTGCTACTTGTTGCTGTATTTTTGAGTTCGGAAATGCTTGCTTCGAGTGGGGTTGCTGTCCTCTTGAGGGTGCTTCCTGCTGTGATGACCACTACAGTTGCTGCCCTGCAGACTATCCCATCTGCAACACTTACGCTGGAACTTGTCTCAGGAGCAAGAACAACCCCTTTGGAGTGAAGGCATTAAGGCGTACTCCAGCGAAACCCCATTGGACCTTCGGACGTAAGAACAAGGTCAGCAGTGCTTAA 1431 0.4997 MGSSSITTSPATMTMAAIVLLFTVFAVSSALDMSIISYDSAHADKAATLRTEEELMSMYEQWLVKHGKVYNALGEKEKRFQIFKDNLRFIDDHNSAEDRTYKLGLNRFADLTNEEYRAKYLGTKIDPNRRLGKTPSNRYAPRVGDKLPDSVDWRKEGAVPPVKDQGGCGSCWAFSAIGAVEGINKIVTGELISLSEQELVDCDTGYNQGCNGGLMDYAFEFIINNGGIDSDEDYPYRGVDGRCDTYRKNAKVVSIDDYEDVPAYDELALKKAVANQPVSVAIEGGGREFQLYVSGVFTGRCGTALDHGVVAVGYGTAKGHDYWIVRNSWGSSWGEDGYIRLERNLANSRSGKCGIAIEPSYPLKNGPNPPNPGPSPPSPVKPPNVCDNYYSCADSATCCCIFEFGNACFEWGCCPLEGASCCDDHYSCCPADYPICNTYAGTCLRSKNNPFGVKALRRTPAKPHWTFGRKNKVSSA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02292 476 Pfam Papain family cysteine protease 147 362 IPR000668 GO:0006508|GO:0008234
Gma17g02292 476 Gene3D Cysteine proteinases 40 365 - -
Gma17g02292 476 SUPERFAMILY Granulin repeat 383 417 - -
Gma17g02292 476 SMART pept_c1 147 363 IPR000668 GO:0006508|GO:0008234
Gma17g02292 476 Pfam Cathepsin propeptide inhibitor domain (I29) 59 116 IPR013201 -
Gma17g02292 476 PRINTS Papain cysteine protease (C1) family signature 165 180 IPR000668 GO:0006508|GO:0008234
Gma17g02292 476 PRINTS Papain cysteine protease (C1) family signature 307 317 IPR000668 GO:0006508|GO:0008234
Gma17g02292 476 PRINTS Papain cysteine protease (C1) family signature 322 328 IPR000668 GO:0006508|GO:0008234
Gma17g02292 476 SMART GRAN_2 386 443 IPR000118 -
Gma17g02292 476 PANTHER CYSTEINE PROTEASE 40 392 - -
Gma17g02292 476 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 305 315 IPR025660 -
Gma17g02292 476 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 322 341 IPR025661 -
Gma17g02292 476 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 40 392 - -
Gma17g02292 476 SMART Inhibitor_I29_2 59 116 IPR013201 -
Gma17g02292 476 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 165 176 IPR000169 -
Gma17g02292 476 CDD Peptidase_C1A 148 362 IPR039417 -
Gma17g02292 476 Gene3D Granulin 384 446 IPR037277 -
Gma17g02292 476 SUPERFAMILY Cysteine proteinases 51 363 IPR038765 -
Gma17g02292 476 Pfam Granulin 397 444 IPR000118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02292 Gma-Chr17 40867750 40872159 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02292 K25900 - gmx:100805702 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02292 17 40867750 40872159 Gma17g02292 17 40867750 40872159 ECH
Gma17g02292 17 40867750 40872159 Gma14g00748 14 7637573 7642006 GST
Gma17g02292 17 40867750 40872159 Gma04g00391 04 3374169 3377896 PCT
Gma04g00391 04 3374169 3377896 Gma17g02292 17 40867750 40872159 PCT