Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00391 ATGGGTACTAACAGATCTTTAATGGCCACGATCCTCATCGTGTTCTTCACGGTGTTGGCAGTGTCATCGGCGTTGGACATGTCGATAATCTCGTATGACAGAAGCCACGCGGACAAGTCAGGGTGGAAGAGTGACGAGGAGGTAATGAGTATATACGAGGAGTGGCTTGTGAAGCATGGGAAGGTGTATAACGCCGTCGAAGAGAAGGAGAAGAGGTTTCAGATCTTCAAAGACAACCTCAACTTTATCGAAGAACACAATGCTGTGAACCGGACATACAAGGTTGGACTGAACCGGTTCAGTGATCTTAGCAACGAGGAGTACCGGTCAAAATACCTGGGAACCAAGATTGATCCCAGCAGAATGATGGCCAGACCAAGTAGACGTTACTCTCCGCGCGTGGCTGACAATTTGCCGGAATCTGTTGATTGGAGGAAAGAAGGTGCTGTTGTCAGAGTCAAAAACCAATCAGAATGCGAGGgctgctgggcattctcagcaattgccgcagttgaaggaattaacaagatagtaacaggcaatctaactgcactgtcagagcaagaactgttggactgtgatagaaccgtcaatgcaggatgtagtggcggacttgtggactatgcctttgagttcattatcaacaatggtggcattgacactgaagaggattacccctttcaaggtgctgatggtatctgtgatcaatacaagATAAATGCTAGAGCTGTTACAATTGATGGTTACGAACGTGTTCCTGCTTATGATGAATTAGCCTTGAAAAAGGCAGTAGCAAATCAACCCGTGAGCGTTGCCATTGAAGCATATGGCAAAGAGTTTCAATTATATGAATCTggtatattcacaggaacatgtgggacatcaatagaccatggtgttacagctgttgggtacggaacagaaaatggaattgactattggatcgtcaaaaattcatggggtgagaattggggagaggcaggttatgtaagaatggaacgtaatatagCAGAAGACACTGCAGGAAAGTGTGGAATTGCGATTCTGACATTGTATCCCATAAAGATTGGCCAAAATCCCTCAAACCCAGATAACTCCAGCTAA 1104 0.2962 MGTNRSLMATILIVFFTVLAVSSALDMSIISYDRSHADKSGWKSDEEVMSIYEEWLVKHGKVYNAVEEKEKRFQIFKDNLNFIEEHNAVNRTYKVGLNRFSDLSNEEYRSKYLGTKIDPSRMMARPSRRYSPRVADNLPESVDWRKEGAVVRVKNQSECEGCWAFSAIAAVEGINKIVTGNLTALSEQELLDCDRTVNAGCSGGLVDYAFEFIINNGGIDTEEDYPFQGADGICDQYKINARAVTIDGYERVPAYDELALKKAVANQPVSVAIEAYGKEFQLYESGIFTGTCGTSIDHGVTAVGYGTENGIDYWIVKNSWGENWGEAGYVRMERNIAEDTAGKCGIAILTLYPIKIGQNPSNPDNSS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00391 367 Gene3D Cysteine proteinases 31 356 - -
Gma04g00391 367 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 33 359 - -
Gma04g00391 367 SMART pept_c1 138 354 IPR000668 GO:0006508|GO:0008234
Gma04g00391 367 PRINTS Papain cysteine protease (C1) family signature 156 171 IPR000668 GO:0006508|GO:0008234
Gma04g00391 367 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Gma04g00391 367 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
Gma04g00391 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Gma04g00391 367 PANTHER CYSTEINE PROTEASE 33 359 - -
Gma04g00391 367 CDD Peptidase_C1A 139 353 IPR039417 -
Gma04g00391 367 Pfam Cathepsin propeptide inhibitor domain (I29) 52 108 IPR013201 -
Gma04g00391 367 Pfam Papain family cysteine protease 138 354 IPR000668 GO:0006508|GO:0008234
Gma04g00391 367 SMART Inhibitor_I29_2 52 108 IPR013201 -
Gma04g00391 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 156 167 IPR000169 -
Gma04g00391 367 SUPERFAMILY Cysteine proteinases 44 354 IPR038765 -
Gma04g00391 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 313 332 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00391 Gma-Chr4 3374169 3377896 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00391 K25900 - gmx:100807362 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00391 04 3374169 3377896 Gma04g00391 04 3374169 3377896 ECH
Gma17g02292 17 40867750 40872159 Gma04g00391 04 3374169 3377896 PCT
Gma14g00748 14 7637573 7642006 Gma04g00391 04 3374169 3377896 PCT
Gma04g00391 04 3374169 3377896 Gma17g02292 17 40867750 40872159 PCT
Gma04g00391 04 3374169 3377896 Gma14g00748 14 7637573 7642006 PCT