Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02041 ATGCTTTCGTTTTCCACTCTCAGAAGATCCTCACCCTTCCTCGCCCGACGCTTCTCAACCCAACGGTCCCAGATCCGCCACGCGTCAACCTCCTCCTCCTCCTCCTCCTCACTCCACAACACCGCGAACCCGGTTCGAACCTGGTTCGGTCGAAACGCACTCTCGACCGTCCTCGCCGGCGCGAGCGTATCAGGGCTTCTTCTCTACGGCTACTCTTCTTCGCACAATTCCGAGTTCGACTCGTCTCTGCTGAAGAGCTCAATTTCTTCTCTCGTTGACCGGTCAACGCCGATTTCCGAGGACCAAGAACGGCGTCGTTCGTTCCTTTCGAAAATTTCGCTCCCTGAATGTTCCGGTGCCTTGCTATTTGGAGATTCGTTCAGGAGAAAGGTTTTCTTCAACTATGAGAAGCGCATACGGTTGCGAAGCCCTCCGGAAAAGGTTTTTGAGTACTTTGCATCTGATCGTAGTTCAGAAGGAGAAGTTTTGATGAAACCAGCAGACCTAATGCGAGCAGTGGTTCCTGTTTTCCCTCCTTCTGAATCCCACCTTGTTAGAGATGGATACTTGGAAGGTGAAAGGAGGCCGGGCCATTTATGCTGCCCTTCTTCAGAATTTTTTATGCTTTTTGATGTAAACAATGATGGGCTGATATCTTTTAAAGAGTATATCTTTTTTGTAACACTACTCAGCATCCCAGAATCAAGCTTTTCAGTGACATTTAAAATGTTTGATGTCAACAATAATGGGGAGATAAATAAGGAAGAATTCAAGAAAGTGATGGCATTGATGCGATCTCGTCATCGACAGGGTGTTCACCACAGGGATGGACTGCGAACTGGCCTAAAGGCGAGTGATTCTGTGGAAGATGGAGGGCTGGTGGAATACTTTTTTGATAAAGATGGAAATGGATGCCTCCAACATGATAAATTTGTAAATTTTTTGAGAGGCTTGCATGATGAGATTCTGAGGCTGGAGTTTGCTCATTATGACTACCAATCTTGCCAAACCATATCAGCCAAGGACTTTGCGCTCTCCATGGTTGCTTCTGCCGACATGAGTCATCTAGGCAGGTTGCTTGAAAGGGTTGATGGACTGAATGATGATCCACGCCTTAAGGATGCACGAATCACATTTGAGGACTTCAAAAACTTTGCAGAGCTACGGAAAAAGTTACTGCCATTTTCATTGGCCCTTTTCAGTTTTGGAGAAGTAAATGGCCTGTTGACAAGAGATGATTTTCAGAGAGCAGCATCACATGTATGTGGCATATCTCTCTCGGACACTGTGGTTGAAATTGTTTTCCATTTGTTTGATGCAAATCGGGATGGAAACCTAAGTTTTGACGAGTTTGTCAGAGTGCTACACAAGCGCGAAAGGGACATTGCACAACCCGTGGAGACAGGAATACGGGGTTGGTTGTCTTGCGGTTGGAACTGTACGCATAACTTCTCATCTTCATGA 1464 0.4631 MLSFSTLRRSSPFLARRFSTQRSQIRHASTSSSSSSSLHNTANPVRTWFGRNALSTVLAGASVSGLLLYGYSSSHNSEFDSSLLKSSISSLVDRSTPISEDQERRRSFLSKISLPECSGALLFGDSFRRKVFFNYEKRIRLRSPPEKVFEYFASDRSSEGEVLMKPADLMRAVVPVFPPSESHLVRDGYLEGERRPGHLCCPSSEFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFSVTFKMFDVNNNGEINKEEFKKVMALMRSRHRQGVHHRDGLRTGLKASDSVEDGGLVEYFFDKDGNGCLQHDKFVNFLRGLHDEILRLEFAHYDYQSCQTISAKDFALSMVASADMSHLGRLLERVDGLNDDPRLKDARITFEDFKNFAELRKKLLPFSLALFSFGEVNGLLTRDDFQRAASHVCGISLSDTVVEIVFHLFDANRDGNLSFDEFVRVLHKRERDIAQPVETGIRGWLSCGWNCTHNFSSS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02041 487 ProSitePatterns EF-hand calcium-binding domain. 245 257 IPR018247 -
Gma17g02041 487 CDD EFh 205 262 IPR002048 GO:0005509
Gma17g02041 487 SUPERFAMILY EF-hand 205 456 IPR011992 -
Gma17g02041 487 Gene3D - 404 467 - -
Gma17g02041 487 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 1 486 - -
Gma17g02041 487 Pfam EF hand 206 223 IPR002048 GO:0005509
Gma17g02041 487 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 486 IPR039800 GO:0005509|GO:0006851
Gma17g02041 487 ProSiteProfiles EF-hand calcium-binding domain profile. 232 267 IPR002048 GO:0005509
Gma17g02041 487 CDD EFh_MICU 237 458 - -
Gma17g02041 487 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Gma17g02041 487 Pfam EF hand 240 263 IPR002048 GO:0005509
Gma17g02041 487 Gene3D - 272 402 - -
Gma17g02041 487 Pfam EF-hand domain pair 407 456 IPR002048 GO:0005509
Gma17g02041 487 SMART efh_1 430 458 IPR002048 GO:0005509
Gma17g02041 487 SMART efh_1 205 230 IPR002048 GO:0005509
Gma17g02041 487 SMART efh_1 236 264 IPR002048 GO:0005509
Gma17g02041 487 SUPERFAMILY EF-hand 296 388 IPR011992 -
Gma17g02041 487 Gene3D - 120 271 - -
Gma17g02041 487 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02041 Gma-Chr17 36998183 37004040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02041 42 423 EF-hand Containing Proteins AT4G32060 63.566 5.41e-169 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02041 K22827 - gmx:100806575 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02041 17 36998183 37004040 Gma04g00599 04 5464936 5469506 PCT
Gma17g02041 17 36998183 37004040 Gma06g00583 06 5278684 5282576 PCT
Gma04g00599 04 5464936 5469506 Gma17g02041 17 36998183 37004040 PCT
Gma06g00583 06 5278684 5282576 Gma17g02041 17 36998183 37004040 PCT