Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00583 ATGTCTTCCTTTTCCACTCTCCGGAGATTCTCACTGTTCACCCAACAACGCTTCCGTAACCTTCACTCCTCTTCCATTTCCCAATCCTCCTCCTCCTCCTCTTCCAACTCACATAGTAATCCCAAGTGGGGTTCAGCCATTGTCGTAGCCTCTGCTCTTGCCCTTTTCTATTGCTTCAACACACCCAATTCACACTTCGAATTCTCAAACAATGCTCCTCGCAGTTCTTCACCGCCATTGTTTGAAAAATCATCCCTTCCTGAAAGCACACATGATCACTTGCTTTTTGGAGGCAAAAGCAAAGTTTTCTTCAACTATGAGAAGCGCCTACGGTTGCATAGTCCACCCGAAAAGGTTTTTGAATACTTTGCATCTTGTCGTACTCCAGAAGGAGAACTACTGATGAAGCCAGTGGACCTAATGCGAGCAGTTGTTCCTGTTTTCCCTCCTTCAGAATCCAACCTTGTAAGAGAGGGATACTTGAAAGGTGAAAGAAATCCTGGCCATTTATTCTGTCCCCCTTCGAAGTTTTTTATGCTTTTTGATGTAGACAACGATGGGCTTATATCTTTCAAAGAGTATATCTTTTTTGTAACTCTGCTTAGCATCCAAGAATCAAGCTTTTCTGCAGCATTTAAAATGTTTGACAAGGATAATGACGGGTCAATAGATAAGGAAGAATTCAAGAAAGTGATGCAATCAATGCGATCTCATACCAGACAAGGTGTTCAACACGGGGATGGACGACGAACTGGCCTAAAGGCCAATGCTTCTGTAGAAAATGGAGGGCTGGTGGAATACTTATTTGGTAAAGATGGAAAGGGACGCCTCAAACATGATAAATTCGTGCAGTTTATAAGAGACTTGCATGATGAAATTGTAGGGCTGGAATTTGCTCATTATGATTACAAATCTCGAAAAACTATATGGGCCAAGGACTTTGCACGCTCCATTGTTGCTTCTGCTGACTTGAGTCATCTGGGCAGGTTGCTTGAACGGGTTGATGAATTGAGCAATGATCCACGGTTTAAGGATGTATGCATAACATTTGAGGAGTTCAAAAATTTTGCAGAGCTGCGGAAAAAATTATTACCATTTTCATTGGCCATTTTCAGTTTTGCAGAAGTGCAAGGCCTGTTAACAAGAGATGATTTTCAGCGAGCTGCATCACATGTTTGTGGCGTATCTCTCTCAGACAACGTGGTTGAGATTGTTTTCCATTTGTTTGACGCAAATGAGGATGGAAATCTGAGTACGGAGGAGTTTGTTAGTGTGCTACAACATCGAGAAAGAGACATTGCTCAACCTGTGGAGACAGGAATCATGGGTTTCTTGTCATGCTGCTGGAAATGTACGGACACCTCTCCATCTTCTCGGTTGTTTTCCTGA 1389 0.4269 MSSFSTLRRFSLFTQQRFRNLHSSSISQSSSSSSSNSHSNPKWGSAIVVASALALFYCFNTPNSHFEFSNNAPRSSSPPLFEKSSLPESTHDHLLFGGKSKVFFNYEKRLRLHSPPEKVFEYFASCRTPEGELLMKPVDLMRAVVPVFPPSESNLVREGYLKGERNPGHLFCPPSKFFMLFDVDNDGLISFKEYIFFVTLLSIQESSFSAAFKMFDKDNDGSIDKEEFKKVMQSMRSHTRQGVQHGDGRRTGLKANASVENGGLVEYLFGKDGKGRLKHDKFVQFIRDLHDEIVGLEFAHYDYKSRKTIWAKDFARSIVASADLSHLGRLLERVDELSNDPRFKDVCITFEEFKNFAELRKKLLPFSLAIFSFAEVQGLLTRDDFQRAASHVCGVSLSDNVVEIVFHLFDANEDGNLSTEEFVSVLQHRERDIAQPVETGIMGFLSCCWKCTDTSPSSRLFS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00583 462 CDD EFh 176 233 IPR002048 GO:0005509
Gma06g00583 462 ProSitePatterns EF-hand calcium-binding domain. 216 228 IPR018247 -
Gma06g00583 462 SUPERFAMILY EF-hand 176 428 IPR011992 -
Gma06g00583 462 Gene3D - 320 435 - -
Gma06g00583 462 Pfam EF hand 209 235 IPR002048 GO:0005509
Gma06g00583 462 Gene3D - 116 287 - -
Gma06g00583 462 SUPERFAMILY EF-hand 268 432 IPR011992 -
Gma06g00583 462 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Gma06g00583 462 CDD EFh_MICU 208 429 - -
Gma06g00583 462 PANTHER CALCIUM-BINDING EF HAND PROTEIN 1 462 - -
Gma06g00583 462 ProSiteProfiles EF-hand calcium-binding domain profile. 203 238 IPR002048 GO:0005509
Gma06g00583 462 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 462 IPR039800 GO:0005509|GO:0006851
Gma06g00583 462 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Gma06g00583 462 SMART efh_1 401 429 IPR002048 GO:0005509
Gma06g00583 462 SMART efh_1 207 235 IPR002048 GO:0005509
Gma06g00583 462 SMART efh_1 173 201 IPR002048 GO:0005509
Gma06g00583 462 Pfam EF-hand domain pair 178 199 IPR002048 GO:0005509
Gma06g00583 462 Pfam EF-hand domain pair 378 429 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00583 Gma-Chr6 5278684 5282576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00583 42 394 EF-hand Containing Proteins AT4G32060 60.053 3.22e-148 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00583 K22827 - gmx:100786375 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00599 04 5464936 5469506 Gma06g00583 06 5278684 5282576 GST
Gma17g02041 17 36998183 37004040 Gma06g00583 06 5278684 5282576 PCT
Gma06g00583 06 5278684 5282576 Gma17g02041 17 36998183 37004040 PCT