Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01872 ATGACCTCCTCACCCTTCTCCCCACGACAATTTCCCTCTTCCTCGTTCCAACCCATGGCAGAATCAATGCCATTGAAGACCATCTCAAATTTGAATTCAAGTTCGAATTCACGTGGGGCAAGAAGAGATGCATTAGAGAGAAAAAGAAAGAAATTGTTTGCCTCTAGAACGGAGCAACGACAAGCCCCACATCAGGAGGCTCATCAAGATTTGGGAGACCCACGACAAGTCCAAGAAGGTGAAGGTGAAGGTGAAGTGGTTCTTTCACCTCGGGCTTTGCCAATGTTAGAATCGGAATCCTGGGTGGAGAGGAGGATTGAAACAAAGGGATTCTCATCCCTTTCTCTGTCATTGTGGGTGATTTTGGATGAGGTTGAGGTTGCGAATAAGCATTTCGGGAAGCTGAACACGATTGTGATGAACGCGGTGGTGGAGGCTTGTGTTCGATGCGGTGACATCGATTCGGCGATTAGAATATTTGATGGGATGAAAAAACGCGATGGTTGTGGTGTGGATACTGTCACCTATGCCACGCTTTTGAAGGCATTATATTATACTATTAATGGATTAGGCGAGGCACGAAGAGTTGACGAGGCTTTTGAATTGCTTGAAACTGTGGAAAATGGTACTGTCATGGGAAGTCCAAACTTGTCAGCTCCATTGATCTTTGGTCTGCTAAATGCCTTGATCAAAACAGGAGACTTGCGTCGTGCAAATGGTCTCCTTGCCTGTTATGGTTTTGTGCTTCGTGAAGGTGACAACTTTCCAGTCTCAGTATACAACATACTAATGAAGGGCTACATAAACTCAGGTTGTCCACACACTGCAATAAACATGCTCAATGAAATTTTACGTCAAGGCATAATGCCTGATAGGCTCACATATAACACACTAATTTTAGCATGTGTCGAGAGTGGAAAGTTGGATGCTGCAATGCAATTTTTTGGGGAAATGAAGGGCGAAGCACAGAAGTTCGTCAATGATGATCTATTTCCAGATATTGTTACATATACAACAATGCTTAAGGGTTTTGGGCGGATGAAGGATCTTGCTTCAGTTCTGAAAATAGTGCTGGAAATGAAATCTTGTCGTGAATTATACATTGATAGAACTGCTTACACTGAAATAGTTGATGTTTTTCTAAAATGTGGCTCAGTTAAGGGTGCTCTGTGTATTTTTGGAGAAATATTGAAGCAGGCTGGTCTGAATCCAGAGTTGAGGCCAAAGCCTCACCTCTATCTTTCCATGATGCGTGCCTTTGCTTTTCTTGGAGATTATGATCTAGTTAAAAAATTGCATAAACGGATTTGGCCAGATTCAGCAGGAACCATATTATTAGTTGCTCAAGAAGAAGCTGATCACCTTCTCATGGAAGCAGCACTGAATGCTGGCCAGGTTAATGTTGCCATTAAAACTCTTACTGAGATTGTTTCAAGATGGAAGGGCATATCCTGGACAAGTCGTGGGGGCATGGTTGCTTATTGTATTGAGGCGATGTTGGGATTCTCAAAGTCCTTATTCAGTCCTCACTTACTTCCCCAGGTTTCACCTTCTGAACCGGTTGAGAATTATATGATACAATTTGAAGCAACACGGCCACTACAAGGTACCATAAAACTGAGGAAAGTAGTTATGCGTTTTTTTCATGAAGCAGTTGTTCCTATTGTAGATGAATGGGAAAGTTGTACAGGGCTGTTCCATCGTGAAGACTGCAACCAG 1719 0.4282 MTSSPFSPRQFPSSSFQPMAESMPLKTISNLNSSSNSRGARRDALERKRKKLFASRTEQRQAPHQEAHQDLGDPRQVQEGEGEGEVVLSPRALPMLESESWVERRIETKGFSSLSLSLWVILDEVEVANKHFGKLNTIVMNAVVEACVRCGDIDSAIRIFDGMKKRDGCGVDTVTYATLLKALYYTINGLGEARRVDEAFELLETVENGTVMGSPNLSAPLIFGLLNALIKTGDLRRANGLLACYGFVLREGDNFPVSVYNILMKGYINSGCPHTAINMLNEILRQGIMPDRLTYNTLILACVESGKLDAAMQFFGEMKGEAQKFVNDDLFPDIVTYTTMLKGFGRMKDLASVLKIVLEMKSCRELYIDRTAYTEIVDVFLKCGSVKGALCIFGEILKQAGLNPELRPKPHLYLSMMRAFAFLGDYDLVKKLHKRIWPDSAGTILLVAQEEADHLLMEAALNAGQVNVAIKTLTEIVSRWKGISWTSRGGMVAYCIEAMLGFSKSLFSPHLLPQVSPSEPVENYMIQFEATRPLQGTIKLRKVVMRFFHEAVVPIVDEWESCTGLFHREDCNQ 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01872 573 Gene3D Tetratricopeptide repeat domain 326 497 IPR011990 GO:0005515
Gma17g01872 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 166 IPR002885 -
Gma17g01872 573 MobiDBLite consensus disorder prediction 1 84 - -
Gma17g01872 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 363 IPR002885 -
Gma17g01872 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Gma17g01872 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Gma17g01872 573 Pfam PPR repeat family 136 183 IPR002885 -
Gma17g01872 573 Pfam PPR repeat family 257 302 IPR002885 -
Gma17g01872 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 404 IPR002885 -
Gma17g01872 573 Pfam Pentatricopeptide repeat domain 323 362 IPR002885 -
Gma17g01872 573 Gene3D Tetratricopeptide repeat domain 112 209 IPR011990 GO:0005515
Gma17g01872 573 MobiDBLite consensus disorder prediction 40 80 - -
Gma17g01872 573 MobiDBLite consensus disorder prediction 1 39 - -
Gma17g01872 573 Gene3D Tetratricopeptide repeat domain 224 325 IPR011990 GO:0005515
Gma17g01872 573 TIGRFAM PPR: pentatricopeptide repeat domain 259 291 IPR002885 -
Gma17g01872 573 TIGRFAM PPR: pentatricopeptide repeat domain 294 319 IPR002885 -
Gma17g01872 573 TIGRFAM PPR: pentatricopeptide repeat domain 140 172 IPR002885 -
Gma17g01872 573 TIGRFAM PPR: pentatricopeptide repeat domain 335 363 IPR002885 -
Gma17g01872 573 PANTHER OS09G0431600 PROTEIN 108 573 IPR044781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01872 Gma-Chr17 32397583 32408628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01872 280 527 Glycosyltransferase AT1G05670 26.690 2.04e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01872 - - gmx:100801084 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01872 17 32397583 32408628 Gma14g01222 14 19841518 19850666 GST