Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01782 ATGTCTTCTTTTCTTCCCGCCTCAGCCGAGTCACTTGATCTGGCAGTGGAGGCCAAAGACCCGTCTGAGTCCATCTCCATTCTTTATCAGGTACTTGATGATCCTTCTTCTTCTCCAGATGCTCTGCGCATGAAAGAGCAGGCCATCACAAACCTCACTGAGCATCTCAGGGAACAGAATAGGGCAGAGGATTTGCACAGCCTTCTTACACAGTTGAGGCCCTTCTTTTCCTTGATTCCTAAGGCAAAAACTGCAAAGATAGTGAGGGGCATAATTGATACTGTTGCAAAAATACCAGGGACTTCTGATCTACAAATTACACTATGCAAAGAAATGATGCAATGGACTCGTGCTGAAAAGCGTACCTTTCTGAGGCAGCGAGTTGAGGCAAGGCTTGCAGCACTTCTGATGGAAAGTAAAGATTATTCTGAAGCTTTGACTCTCCTCAGCGGCCTGGTCAAAGAGGTTAGAAGACTAGATGACAAGCTTCTACTTGTAGACATAGACTTGCTTGAAAGCAAGCTACACTTCTCCTTAAGAAACCTTCCAAAGGCAAAAGCTGCTCTCACAGCTGCAAGAACAGCTGCAAATGCTATTTATGTTCCTCCAGCTCAACAAGGTGCCATAGATCTACAGAGTGGGATTCTTCACGCAGAGGAGAAGGATTACAAAACTGCATATAGTTATTTCTTTGAAGCTTTTGAGTCTTTCAATGCTCTTGATGACCCCAAGGCTGTATTTAGCCTGAAATACATGTTGTTATGCAAGATTATGGTGAGTCAAGCTGATGATGTGGCTGGAATCATATCTTCTAAAGCTGGCGTGCAATATCTTGGGCCTGATTTGGATGCTATGAAAGCCATTGCAGATGCTCATTCTAAGCGATCTCTGAAGTTATTCGAAATTGCTTTGCGAGACTACAAGGCTCAGTTGGAGGAAGATCCAATTGTCCACAGGCACCTGTCATCCCTGTATGATTCTCTCATGGAGCAGAACCTTTGGAGATTGATTGAACCATACGCAAGGGTTGAGATTGCACACATTGCTGAACTAATTAAACTTCCTGTTGATCACGTGGAGCAAAAGTTGTCTCAGATGATTTTGGACAAGAAGTTCGTTGGGACATTGGATCAAGGAGCTGGATGCCTTGTCATATTCGATGATCCCAAGACTGATGCAATATATCCTGCAACCTTAGAAACCATTTTCAATATTGGGAAAGTTGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAGTGGCATGA 1266 0.4368 MSSFLPASAESLDLAVEAKDPSESISILYQVLDDPSSSPDALRMKEQAITNLTEHLREQNRAEDLHSLLTQLRPFFSLIPKAKTAKIVRGIIDTVAKIPGTSDLQITLCKEMMQWTRAEKRTFLRQRVEARLAALLMESKDYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALDDPKAVFSLKYMLLCKIMVSQADDVAGIISSKAGVQYLGPDLDAMKAIADAHSKRSLKLFEIALRDYKAQLEEDPIVHRHLSSLYDSLMEQNLWRLIEPYARVEIAHIAELIKLPVDHVEQKLSQMILDKKFVGTLDQGAGCLVIFDDPKTDAIYPATLETIFNIGKVVDSLYVRSAKIVA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01782 421 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 2 421 - -
Gma17g01782 421 ProSiteProfiles PCI domain profile. 222 390 IPR000717 -
Gma17g01782 421 SMART PINT_4 319 402 IPR000717 -
Gma17g01782 421 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 392 417 IPR040780 -
Gma17g01782 421 SUPERFAMILY "Winged helix" DNA-binding domain 313 395 IPR036390 -
Gma17g01782 421 Coils Coil 42 62 - -
Gma17g01782 421 Gene3D - 45 420 - -
Gma17g01782 421 PANTHER - 2 421 - -
Gma17g01782 421 SUPERFAMILY TPR-like 130 322 IPR011990 GO:0005515
Gma17g01782 421 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 319 402 - -
Gma17g01782 421 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 17 127 IPR040773 -
Gma17g01782 421 Pfam PCI domain 284 385 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01782 Gma-Chr17 25633249 25634759 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01782 K03036 - gmx:100777365 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01782 17 25633249 25634759 Gma14g01280 14 23301118 23301669 GST
Gma04g00714 04 6636953 6642325 Gma17g01782 17 25633249 25634759 PCT
Gma06g00702 06 6374697 6378834 Gma17g01782 17 25633249 25634759 PCT