Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00714 ATGTTGTTGATCGCTATATATGCACCCACAACTTCTCCTCTGAGCATTGAGATATGGCGACTGATAACACATGCAAATGCTAAGAGCAAGAGTGAGAAGTCTCCTCCTCCTCATGAAGATGGAACTCTAGCTAGGCTATCCTTTGGAGCCCGATTGCTCACTTTGAAACGGGTTTGCACGGTTCCATTTTTTCCCAAACTATACGGCACAGCATCGAAATTTCCCTATACTTGCTTCCGCAAGGAAAGAATTCTACAGTACTCGCCGATAAGGGGTTTTCCAAAGCAGGAGCAATGTCTTCCTCTTATCTTCCTGCCACAACTGAGTCACTTGCTCTGGCAAATGAGGCCAAAGACCCATCTGAGGCCATCTCCATTCTTTATCGGGGGAGAGGATCTGTGCAGCCTTCTCACTCAGTTGAGGCCATTCTTCTCCTTGATACCTAAGGCAAAAACTGCAAAGATTGTTAGGGGAATAATTGACTCAGTTGCTAAAATACCAGGGACATCTGATCTACAAATTGCACTCTGCAAAGAAATGGTGCTATGGACTCGTGCTGAAAAGCGGACCTTTCTGAGACAGCGAGTTGAGGCAAGGCTTGCAGCACTTCTGATGGAAAATTTGCTGGAAAGCAAGCTGCATTTCTCATTAAGAAACCTTCCAAAGGCAAAAGCTGCACTCACGGCTGCAAGAACAGCTGCAAATGCTATTTATGTGCCCCCAGCTCAACAAGGTGCCATAGATCTGCAGAGTGGAATACTTCATGCTGAAGAAAAGGATTATAAAACTGCTTATAGTTATTTCTTTGAAGCTTTTGAATCATTCAATGCTCTTGATGACCCCAAGGCTGTTTTTAGCCTGAAATATATGTTGCTGTGTAAGATCATGGTGAATCAAGCTGATGACGTAGGAGGAATTATTTCTTCTAAAGCAGGCCTGCAATATCTTGGCCCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCACATTCTAAGCGGTCCCTTAAGTTGTTTGAAATTGCTTTGAGGGACTACAAGGCACAGTTGGAGGAAGACCCAATTGTACACAGGCACCTTTCATCCTTGTACGATACCCTTATGGAGCAGAATCTTTGCAGATTGATCGAGCCTTTCTCAAGGGTTGAGATTGCACATATTGCTGAACTTATTGAACTTCCCACCGATCATGTGGAGCGGAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGAACATTGGATCAAGGTGCTGGATGCCTTGTCATATTCGACGATCCCAAGACTGATGCTATATATCCTGCTACTCTAGAGACCATTTCCAATGTTGGGAAAGTCGTGGACAGTCTTTATGTTAGGTCTGCCaagataatggcatga 1380 0.4384 MLLIAIYAPTTSPLSIEIWRLITHANAKSKSEKSPPPHEDGTLARLSFGARLLTLKRVCTVPFFPKLYGTASKFPYTCFRKERILQYSPIRGFPKQEQCLPLIFLPQLSHLLWQMRPKTHLRPSPFFIGGEDLCSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVLWTRAEKRTFLRQRVEARLAALLMENLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALDDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYLGPDLDAMKAVADAHSKRSLKLFEIALRDYKAQLEEDPIVHRHLSSLYDTLMEQNLCRLIEPFSRVEIAHIAELIELPTDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00714 459 Gene3D - 129 458 - -
Gma04g00714 459 ProSiteProfiles PCI domain profile. 260 428 IPR000717 -
Gma04g00714 459 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 430 455 IPR040780 -
Gma04g00714 459 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 357 440 - -
Gma04g00714 459 Pfam PCI domain 322 423 IPR000717 -
Gma04g00714 459 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 208 459 - -
Gma04g00714 459 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 130 207 - -
Gma04g00714 459 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 131 195 IPR040773 -
Gma04g00714 459 PANTHER BNAA09G54190D PROTEIN 208 459 - -
Gma04g00714 459 SMART PINT_4 357 440 IPR000717 -
Gma04g00714 459 PANTHER BNAA09G54190D PROTEIN 130 207 - -
Gma04g00714 459 SUPERFAMILY "Winged helix" DNA-binding domain 351 433 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00714 Gma-Chr4 6636953 6642325 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00714 K03036 - gmx:100796188 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00714 04 6636953 6642325 Gma06g00702 06 6374697 6378834 GST
Gma04g00714 04 6636953 6642325 Gma17g01782 17 25633249 25634759 PCT
Gma04g00714 04 6636953 6642325 Gma14g01280 14 23301118 23301669 PCT