Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01405 ATGGCTACTCCACTGTCTACCGTTGTGGATGTGTATTTCACAGACACCAAAAGAACAAGATTTAGCATCACCACCACTCCTTGCAGGCAAAAAACCAATAGAAAATTCTTCATACACTGTGCTACTTCAAATTCCACTCCAGAAGCTCCTCCAACACCAACTTCAGACAACAACAACAAGAAAAACACTTCCTTATCCGACCAACTCGCACCCCTTGCCAACAAAACGCTATCTTCCGCCACAAGAGACCAATCCTATGCGTTATCTAAGCCAAAATCCACATGGGTCAACCCCACAAAAGCAAAACGCTCTGTGTTATCATCTGAGAGACAAAAACGTGCCACTTACTCTTATAGTCCGCAATTGAGAGATTTGAAACGCTTTGCTCAGAAACTGAACGAGTCTGGTTCCTCTGAAGACGCATTCTTGGCTTGTTTGGAGGAGATTCCGCGCCCAATTTCAAGAGAAAACGCGTTGCTGATACTCAACACGTTGAAGCCATGGCAAAAGACCAATCTTTTTCTGAACTGGATCAGGACCCAGAACTTGCTTCCCATGGAAACCATATTCTACAATGTCACAATGAAGTCTCTGAGGTTTGGGAAGCAGTTTGGGCTGATAGAAGAGCTTGCACACCAGATGATTGATAATGGGGTTCCACTTGACAACATCACGTACTCCACCATCATTTCCTGTGCCAAGAAGTGCAACCTCTATGACAAAGCAGTGCACTGGTTTGAGAGGATGTACAAGACCAGTTTGATGCCTGATGAGGAAATGGAGTCTGTTGGGGTGCAGCCTAATTTGGTTGTGTACAACACCTTGTTGGAGGCAATGGGAAAGGCCGGGAAGCCGGTGTTCGCCAGGGGGTTGTTTGAGGAAATGATTGAGTTGGGAATTGTGCCAAACGAGAAGACCCTGACGGCGGTTATTAAGATATACGGCAAGGCGAGGTGGTCGCGAGACGCATTGGAGTTGTGGCAACGGATGAAGGAGAACGGCTGGCCAATGGATTTTATCTTGTATAATACTTTGTTGAATATGTGTGCGGATGTTGGACTGGTGGAGGAAGCCGAGACTTTGTTCAGGGACATGAAGCAGTCTGCGCATTGCAAGCCGGACAGTTGGAGTTACACGGCGATGCTCAACATATATGGGAGTCAGGGAGATGTTGATAAGGCGATGAAATTGTTCAACGAGATGTGTAAGTCGGGCGTTGAACTCAACGTGATGGGGTTTACCTGTTTGATTCAGTGCTTGGGAAGGGCTATGGAGTTTGATGATTTGGTGAGAGTTTTTGGCATTTCAGTTGAGAGAGGAATTAAGCCAGATGATAGGCTGTGTGGTTGCTTGCTATCTGTTGTGTCTCTGTCTCAGGGTAGCAACGATGAGGAAAAAGTCCTCGCTTGTTTGCAGCGAGCGAACCCGAAATTGGTTGCCTTTATTCATTTGATTGAAGATGAAAAAACCAGTTTTGAGAGTGTCAAGGAAGAGTTCAAGGGTATCATGAGCAATGCAGCTGTTGAAGTGAGAAGACCCTTCTGTAACTGTTTGATTGACATATGTAGAAACAAAGATCTTCGAGAGAGAGCCCATGAGCTACTCTACTTGGGAACCTTATATGGATTATACCCAGGTTTACACAACAAAACTGACAATGAATGGTGTTTAGACGTTCGGTCATTATCGGTTGGTGCAGCTCTAACTGCGCTGGAAGAGTGGATGTGGACACTCACCAAAATCGTTAAGCGGGAGGAGACACTGCCTGAGCTATTCCTAGCCCAAACTGGTACTGGTGCTCATAAGTTTGCCCAAGGACTCAACATTTCTTTTGCCTCTCATTTGAGGAAACTAGCTGCTCCATTTAAGCAGAGTGAGGAAAAAATTGGCTGTTTTATTGCAAGTAGAGAGGATTTAGTCTCTTGGGTGCAATCAAAGTCTACTGCAGCTGCTACTGCTACATAG 1965 0.455 MATPLSTVVDVYFTDTKRTRFSITTTPCRQKTNRKFFIHCATSNSTPEAPPTPTSDNNNKKNTSLSDQLAPLANKTLSSATRDQSYALSKPKSTWVNPTKAKRSVLSSERQKRATYSYSPQLRDLKRFAQKLNESGSSEDAFLACLEEIPRPISRENALLILNTLKPWQKTNLFLNWIRTQNLLPMETIFYNVTMKSLRFGKQFGLIEELAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTSLMPDEEMESVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEMIELGIVPNEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSAHCKPDSWSYTAMLNIYGSQGDVDKAMKLFNEMCKSGVELNVMGFTCLIQCLGRAMEFDDLVRVFGISVERGIKPDDRLCGCLLSVVSLSQGSNDEEKVLACLQRANPKLVAFIHLIEDEKTSFESVKEEFKGIMSNAAVEVRRPFCNCLIDICRNKDLRERAHELLYLGTLYGLYPGLHNKTDNEWCLDVRSLSVGAALTALEEWMWTLTKIVKREETLPELFLAQTGTGAHKFAQGLNISFASHLRKLAAPFKQSEEKIGCFIASREDLVSWVQSKSTAAATAT 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01405 654 SMART SMR_2 554 637 IPR002625 -
Gma17g01405 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Gma17g01405 654 TIGRFAM PPR: pentatricopeptide repeat domain 224 258 IPR002885 -
Gma17g01405 654 TIGRFAM PPR: pentatricopeptide repeat domain 377 410 IPR002885 -
Gma17g01405 654 TIGRFAM PPR: pentatricopeptide repeat domain 306 338 IPR002885 -
Gma17g01405 654 TIGRFAM PPR: pentatricopeptide repeat domain 270 304 IPR002885 -
Gma17g01405 654 TIGRFAM PPR: pentatricopeptide repeat domain 413 444 IPR002885 -
Gma17g01405 654 TIGRFAM PPR: pentatricopeptide repeat domain 341 375 IPR002885 -
Gma17g01405 654 SUPERFAMILY HCP-like 239 406 - -
Gma17g01405 654 PANTHER OS03G0856100 PROTEIN 258 647 - -
Gma17g01405 654 PANTHER OS03G0856100 PROTEIN 29 258 - -
Gma17g01405 654 Pfam PPR repeat family 267 312 IPR002885 -
Gma17g01405 654 Pfam PPR repeat family 373 420 IPR002885 -
Gma17g01405 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Gma17g01405 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Gma17g01405 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Gma17g01405 654 ProSiteProfiles Smr domain profile. 557 637 IPR002625 -
Gma17g01405 654 MobiDBLite consensus disorder prediction 42 61 - -
Gma17g01405 654 Gene3D Tetratricopeptide repeat domain 260 352 IPR011990 GO:0005515
Gma17g01405 654 Gene3D Tetratricopeptide repeat domain 126 259 IPR011990 GO:0005515
Gma17g01405 654 Gene3D Tetratricopeptide repeat domain 353 468 IPR011990 GO:0005515
Gma17g01405 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Gma17g01405 654 Pfam PPR repeat 224 249 IPR002885 -
Gma17g01405 654 Pfam PPR repeat 341 367 IPR002885 -
Gma17g01405 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Gma17g01405 654 PANTHER OS03G0856100 PROTEIN 258 647 - -
Gma17g01405 654 PANTHER OS03G0856100 PROTEIN 29 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01405 Gma-Chr17 13143164 13145305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01405 208 468 Glycosyltransferase AT1G05670 24.521 3.89e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01405 - - gmx:100796315 1199.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01405 17 13143164 13145305 Gma17g01405 17 13143164 13145305 ECH
Gma17g01405 17 13143164 13145305 Gma05g01144 05 32534203 32536341 GST