Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01144 ATGGCTACTCCACTGCCTACCGTTGTGGATGTGTATTTCACAGACACCAAAAGAACTAGATTCAGCATCACCACGCCTTGTAGGCAAAAAACCAATAGAAAATTCTTCATACACTGCGCTACTTCAAATTCCACTCCAGAAGCTCCTCCAACACCAACTTCAGACAACAACAACAACAACAAGAAAAACACTTCCTTATCCGACCAACTCGCACCCCTTGCCAACAAAACCCTATCTTCCGCCACAAGAGACCAATCCTATGCGTTATCTAAGCCAAAATCCACATGGGTCAACCCCACCAAAGCAAAACGCTCTGTGTTATCCTCTGAGAGACAAAAACGTGCTACTTACTCATACAGTCCACAATTAAGAGATTTGAAACGTTTTGCTCAGAAACTGAACGAGTCTGGTTCCTCTGAAGACGAGTTCTTGGCTTGTTTGGAGGAGATTCCACGCCCAATTTCAAGAGAAAACGCCTTGTTGATACTCAACACGTTGAAGCCATGGCAAAAGACCAATCTTTTCCTGAATTGGATCAGGACCCAGAACTTGCTTCCCATGGAAACCATATTCTACAATGTCACAATGAAGTCTCTGAGGTTTGGGAAGCAGTTTGGGCTGATAGAAGACCTTGCACACCAAATGATTGATAATGGGGTTCCACTGGACAACATCACTTACTCCACCATCATTTCCTGTGCCAAGAAGTGCAACCTCTATGACAAAGCAGTGCACTGGTTTGAGAGGATGTACAAGACCGGTTTGATGCCTGATGAGGTAACTTACTCTGCTATTCTAGATGTTTATGCTAGGTTAGGCAAGGTTGAAGAAGTGATAAGCTTGTATGAGAGAGGTAGGGCAACTGGGTGGAAGCCTGACCCTATTACTTTCTCTGTGTTGGGGAAGATGTTTGGGGAGGCTGGGGACTATGATGGCATTAGGTACGTGTTTCAGGAGATGGAGTCTGTTGGGGTGCAGCCTAATTTGGTTGTGTACAATACCTTGTTGGAGGCAATGGGAAAGGCTGGGAAGCCGGGGTTTGCGAGGGGCCTGTTTGAGGAAATGATCGAGTCAGGGATTGTGCCGAATGAGAAGACTCTGACTGCGGTTATTAAGATATACGGCAAGGCCAGGTGGTCGCGAGATGCGTTGGAGCTGTGGCAGCGGATGAAGGAAAATGGCTGGCCTATGGATTTTATCTTGTATAATACTTTGTTGAATATGTGTGCGGATGTTGGACTGGTGGAGGAAGCCGAAACTTTGTTCAGGGACATGAAGCAGTCTGTGCATTGCAAGCCGGACAGTTGGAGTTACACGGCAATGCTCAACATATATGGGAGTCAGGGAGATGTTGACAAGGCGATGAAATTGTTTGACGAGATGTGTAAGTTGGGTGTTGAACTCAATGTGATGGGGTTTACCTGTTTGATTCAGTGCTTGGGAAGGGCAATGGAATTTGATGATTTGGTGAGAGTTTTTGACATTTCGGTTGAGAGAGGAATTAAGCCAGATGATAGGCTATGTGGTTGCTTGCTATCTGTTGTGTCTCTGTCTCAGGGTAGCAATGATGAGGAAAAAGTCCTTGCCTGTTTGCAGCAAGCTAACCCGAAACTGGTTGCCTTTATTCATTTGATTGAAGATGAAAAAACCAGTTTTGAGACTGTCAAGGAAGAGTTCAAGGGTATCATGAGCAATGCTGCGGTTGAAGTGAGAAGACCCTTCTGTAACTGCTTGATTGACATATGTAGAAACAAAGATCTTCTAGAGAGAGCCCATGAGCTACTCTACTTGGGAACCTTGTATGGATTATACCCAGGTTTGCACAACAAAACTGTCGAAGAATGGTGTTTAGACGTTCGGTCATTGTCGGTTGGTGCAGCTCTAACTGCACTGGAAGAGTGGATGTGGACACTCACCAAAATCGTTAAGCGGGAGGAGACACTGCCTGAGTTATTCCTAGCCCAAACTGGTACTGGTGCTCATAAGTTTGCCCAAGGACTCAACATTTCTTTTGCCTCTCATTTGAGAAAACTAGCTGCTCCATTTAAGCAGAGTGAGGAAAAAGTAGGCTGTTTTATTGCAAGTAGAGAGGATTTAGTCTCTTGGGTGCAATCAAAGTCTACTGCAGCTGCTACATAG 2139 0.4516 MATPLPTVVDVYFTDTKRTRFSITTPCRQKTNRKFFIHCATSNSTPEAPPTPTSDNNNNNKKNTSLSDQLAPLANKTLSSATRDQSYALSKPKSTWVNPTKAKRSVLSSERQKRATYSYSPQLRDLKRFAQKLNESGSSEDEFLACLEEIPRPISRENALLILNTLKPWQKTNLFLNWIRTQNLLPMETIFYNVTMKSLRFGKQFGLIEDLAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTGLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIESGIVPNEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSVHCKPDSWSYTAMLNIYGSQGDVDKAMKLFDEMCKLGVELNVMGFTCLIQCLGRAMEFDDLVRVFDISVERGIKPDDRLCGCLLSVVSLSQGSNDEEKVLACLQQANPKLVAFIHLIEDEKTSFETVKEEFKGIMSNAAVEVRRPFCNCLIDICRNKDLLERAHELLYLGTLYGLYPGLHNKTVEEWCLDVRSLSVGAALTALEEWMWTLTKIVKREETLPELFLAQTGTGAHKFAQGLNISFASHLRKLAAPFKQSEEKVGCFIASREDLVSWVQSKSTAAAT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01144 712 PANTHER OS03G0856100 PROTEIN 28 707 - -
Gma05g01144 712 SMART SMR_2 614 697 IPR002625 -
Gma05g01144 712 Pfam PPR repeat family 327 372 IPR002885 -
Gma05g01144 712 Pfam PPR repeat family 433 480 IPR002885 -
Gma05g01144 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 428 IPR002885 -
Gma05g01144 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Gma05g01144 712 Gene3D Tetratricopeptide repeat domain 152 305 IPR011990 GO:0005515
Gma05g01144 712 Gene3D Tetratricopeptide repeat domain 412 535 IPR011990 GO:0005515
Gma05g01144 712 Gene3D Tetratricopeptide repeat domain 306 411 IPR011990 GO:0005515
Gma05g01144 712 Pfam Pentatricopeptide repeat domain 211 269 IPR002885 -
Gma05g01144 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Gma05g01144 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Gma05g01144 712 PANTHER OS03G0856100 PROTEIN 28 707 - -
Gma05g01144 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Gma05g01144 712 Pfam PPR repeat 401 427 IPR002885 -
Gma05g01144 712 Pfam PPR repeat 295 325 IPR002885 -
Gma05g01144 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Gma05g01144 712 SUPERFAMILY HCP-like 240 467 - -
Gma05g01144 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Gma05g01144 712 TIGRFAM PPR: pentatricopeptide repeat domain 225 259 IPR002885 -
Gma05g01144 712 TIGRFAM PPR: pentatricopeptide repeat domain 437 470 IPR002885 -
Gma05g01144 712 TIGRFAM PPR: pentatricopeptide repeat domain 401 434 IPR002885 -
Gma05g01144 712 TIGRFAM PPR: pentatricopeptide repeat domain 260 293 IPR002885 -
Gma05g01144 712 TIGRFAM PPR: pentatricopeptide repeat domain 330 364 IPR002885 -
Gma05g01144 712 TIGRFAM PPR: pentatricopeptide repeat domain 473 504 IPR002885 -
Gma05g01144 712 TIGRFAM PPR: pentatricopeptide repeat domain 302 328 IPR002885 -
Gma05g01144 712 TIGRFAM PPR: pentatricopeptide repeat domain 366 398 IPR002885 -
Gma05g01144 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Gma05g01144 712 ProSiteProfiles Smr domain profile. 617 697 IPR002625 -
Gma05g01144 712 MobiDBLite consensus disorder prediction 41 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01144 Gma-Chr5 32534203 32536341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01144 290 546 Glycosyltransferase AT1G05670 20.946 1.73e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01144 - - gmx:100780994 1396.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01144 05 32534203 32536341 Gma05g01144 05 32534203 32536341 ECH
Gma17g01405 17 13143164 13145305 Gma05g01144 05 32534203 32536341 GST