Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01375 ATGGCTCTAACACTTCGTTCTTCAACTTCTTTTATTAATCAGAAGGAAACCAAAGTCCTCAAAACTTCTGATAATGCCCCTGCAATAGTTAGTTTTTCAAAATTCAAGCCATCATCATCATTGTTCCGGCTCCGGGCAAAAAATTCCATGCAAGAAGCTCATCACACTCGTGAGAAATGGGAGAAGGTGCTGGCTCCATCGGTCGCACATAGCCACAATGATTCAAAGAGAGTACCTGTGTATGTGATGTTGCCATTAGACACAGTAACAATGGGAGGAAGCTTGAACAAGCCCAGAGCGATGAATGCGAGTTTGATGGCCCTGAAGAGTGCAGGGGTTGAAGGTGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAGAAAGAAGGGCCTTTGAAGTACAACTGGGAACCCTATGCTGAACTTGTGCAGATGCTGCAAATGCATGGCTTGAAGCTTCAAGTTGTTATGTCTTTCCATCAGTGTGGGGGAAATGTTGGAGACAATTGCAGCATTCCTCTACCACCATGGGTGTTGGAAGAAATCAGCAAGAACCCTGAGCTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCCTTGGGCTGTGATTCGGTTCCTGTTCTAAATGGAAGAACTCCTCTCCAAGTGTACTCTGACTACATGAGAAGCTTTCGTGACAAATTCAGAGATTACTTGGGCAGTGTTATCGTGGAAATACAATTGGGAATGGGTCCTTGTGGAGAGCTCAGATATCCATCTTATCCAGAAACCAATGGAACTTGGAGGTTTCCCGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCATCCTTGGCAGCAGCAGCCGAAGACATTGGAAAGAAAGAATGGGGAGGAGGTGGACCCCATGACTCAGGCCAGTACAATCAATTTCCTGAGGATACTGGATTTTTCAAAAGGGAAGGAACATGGAACACTGAATATGGACAGTTCTTTCTGGAATGGTACTCCGGTAAATTGCTGGAACACGGTGAGAGGATCCTTGTATCTGCCAAAGGAATATTTGAAACAACTGGGGTGAAACTATCAGGGAAAGTTGCAGGAATCCACTGGCATTACAGAGCAAGATCTCACGCAGCTGAACTAACCGCTGGCTACTACAACACACGAAATAACGATGGATATCTGCCTATAGCAAGGATGCTCGCAAAACATGGAGTTGTCTTCAATTTCACCTGCATGGAAATGAAGGACAGAGAGCAGCCAGACTTTGCAAACTGCTCACCTGAAGGGTTAGTTCACCAGGTGAAGATGGCAACAACAACAGCTAGAGCAGAGCTTGCGGGGGAAAATGCATTGGAGAGATATGATGCAGATGCATATGCTCAAGTTTTATCAACAAGTAAGTCAGAATCCGGCAGTGGATTGGCTGCATTCACATATCTAAGAATGAACAAGAGGTTGTTTGAAGCTGACAACTGGCGGCACCTAGTGGATTTCGTAAGAAGCATGTCTGAGGGTGGTCGGAGAGAGAGACTTCCGGCAGCTGATTCCCATGGGAGTGATCTTTATGTTGGGCACATCAAAGCAACACAGGAAAAGCACACACAAGAGGCTGCTCTTGTGTAA 1623 0.4559 MALTLRSSTSFINQKETKVLKTSDNAPAIVSFSKFKPSSSLFRLRAKNSMQEAHHTREKWEKVLAPSVAHSHNDSKRVPVYVMLPLDTVTMGGSLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKEGPLKYNWEPYAELVQMLQMHGLKLQVVMSFHQCGGNVGDNCSIPLPPWVLEEISKNPELVYTDRSGRRNPEYISLGCDSVPVLNGRTPLQVYSDYMRSFRDKFRDYLGSVIVEIQLGMGPCGELRYPSYPETNGTWRFPGIGEFQCYDKYMKASLAAAAEDIGKKEWGGGGPHDSGQYNQFPEDTGFFKREGTWNTEYGQFFLEWYSGKLLEHGERILVSAKGIFETTGVKLSGKVAGIHWHYRARSHAAELTAGYYNTRNNDGYLPIARMLAKHGVVFNFTCMEMKDREQPDFANCSPEGLVHQVKMATTTARAELAGENALERYDADAYAQVLSTSKSESGSGLAAFTYLRMNKRLFEADNWRHLVDFVRSMSEGGRRERLPAADSHGSDLYVGHIKATQEKHTQEAALV 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01375 540 SUPERFAMILY (Trans)glycosidases 76 505 IPR017853 -
Gma17g01375 540 Pfam Glycosyl hydrolase family 14 81 498 IPR001554 GO:0000272|GO:0016161
Gma17g01375 540 PANTHER BETA-AMYLASE 1 540 - -
Gma17g01375 540 Gene3D Glycosidases 70 537 - -
Gma17g01375 540 PANTHER - 1 540 IPR001554 GO:0000272|GO:0016161
Gma17g01375 540 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 112 126 IPR001554 GO:0000272|GO:0016161
Gma17g01375 540 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 133 151 IPR001554 GO:0000272|GO:0016161
Gma17g01375 540 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 155 176 IPR001554 GO:0000272|GO:0016161
Gma17g01375 540 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 247 269 IPR001554 GO:0000272|GO:0016161
Gma17g01375 540 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 322 341 IPR001554 GO:0000272|GO:0016161
Gma17g01375 540 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 358 374 IPR001554 GO:0000272|GO:0016161
Gma17g01375 540 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 375 386 IPR001554 GO:0000272|GO:0016161
Gma17g01375 540 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 393 416 IPR001554 GO:0000272|GO:0016161
Gma17g01375 540 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 430 452 IPR001554 GO:0000272|GO:0016161
Gma17g01375 540 PRINTS Plant beta-amylase signature 237 246 IPR001371 GO:0000272|GO:0016161
Gma17g01375 540 PRINTS Plant beta-amylase signature 396 406 IPR001371 GO:0000272|GO:0016161
Gma17g01375 540 PRINTS Plant beta-amylase signature 478 492 IPR001371 GO:0000272|GO:0016161
Gma17g01375 540 ProSitePatterns Beta-amylase active site 1. 159 167 IPR018238 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01375 Gma-Chr17 12653979 12657363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01375 1 540 Glycoside Hydrolase AT4G17090 70.054 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01375 K01177 - gmx:547683 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01375 17 12653979 12657363 Gma17g01375 17 12653979 12657363 ECH
Gma17g01375 17 12653979 12657363 Gma05g00639 05 6915184 6919052 GST