Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00639 ATGGCTCTAACACTTCGTTCTTCAACTTCTTTTATTAATCAGAAGGAAACCAAAGTCCTTAAAACTTCTGATGATATCCCTGCGACAGTTAGTTTTTCAAAATTCAAGCCATTGGTCCGTCTCCGGGCGAAAAATTCAATGCAAGAAGCGCATCACACTCGCGAGAACAGCTTCAATGAAGCAAGTAGAAGCGAGAAATGGGAGAAGGTGCTTGCTCCATCGGTTGCACATAACCACAATGATTCGAAGAGAGTACCTGTGTATGTGATGCTGCCACTGGACACGGTAACAATGGAAGGAAGATTGAACAAGCCTAGAGCAATGAATGCGAGTTTGATGGCCCTGAAGAGTGCAGGAGTTGAAGGTGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAGAAAGATGGGCCTTTGAAGTACAACTGGGAGCCATATGCTGAGCTTGTACAGATGGTGCAAATGCATGGTTTGAAGCTTCAAGTTGTTATGTCTTTCCATCAGTGTGGGGGCAATGTTGGAGACAATTGCAGCATTCCTCTACCACCATGGGTGTTGGAAGAAATCAGCAAGAACCCTGAGCTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCCTTGGGCTGTGATTCAGTTCCTGTTCTAAGAGGAAGGACTCCTCTCCAAGTGTACTCTGACTACATGAGAAGCTTTCGTGACAGATTCAGAGATTACTTGGGCAGTGTTATCGTGGAAATACAAGTGGGGATGGGTCCTTGTGGAGAGCTGAGATATCCTTCTTATCCGGAAACCAATGGAACTTGGAGGTTTCCCGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCATCCTTGGCAGCAGCAGCCGAAGACATTGGAAAGAAAGAATGGGGAGGAGGAGGACCCCATGACTCAGGCCAGTACAATCAATTTCCTGAGGATACTGGATTTTTCAAAAGGGAAGGAACATGGAACACTGAATATGGACAGTTCTTTCTGGAATGGTACTCTGGTAAATTGCTGGAACACGGTGAGAGGATCCTCGTATCTGCTAAAGGAATATTCCAAACAACTGGGGTGAAACTATCAGGGAAAGTTGCTGGAATCCACTGGCATTACAGAGCAAGGTCACACGCAGCTGAACTAACTGCTGGCTACTATAACACACGACATAACGATGGATATCTGCCTATAGCAAGGATGCTGGCAAAACATGGAGTTGTCTTCAATTTCACCTGCATGGAAATGAAGGACAGAGAGCAGCCTGACTTTGCATATTGCTCACCTGAAGGGTTAGTTCACCAGGTGAAGATGGCAACAACAACAGCTAGAGCAGAACTTGCTGGGGAAAATGCATTGGAGAGATATGATGCAGATGCATATGCTCAAGTTTTATCAACAAGTAAGTCGGAATCCGGCAGCGGATTGGCTGCATTCACATATCTAAGAATGAACAAGAGGTTGTTTGAAGGTGATAACTGGCGGCACCTAGTGGATTTTGTAAGAAACATGTCTGAGGGTGGTCGGAGAGAGAGACTTCCAGCAGCTGATTCCCATGGGAGTGATCTTTATGTTGGGCACATCAAAGCAACACGGGAAAAGCACACACAAGAGGCTGCTCTTGTGTAA 1644 0.4562 MALTLRSSTSFINQKETKVLKTSDDIPATVSFSKFKPLVRLRAKNSMQEAHHTRENSFNEASRSEKWEKVLAPSVAHNHNDSKRVPVYVMLPLDTVTMEGRLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEPYAELVQMVQMHGLKLQVVMSFHQCGGNVGDNCSIPLPPWVLEEISKNPELVYTDRSGRRNPEYISLGCDSVPVLRGRTPLQVYSDYMRSFRDRFRDYLGSVIVEIQVGMGPCGELRYPSYPETNGTWRFPGIGEFQCYDKYMKASLAAAAEDIGKKEWGGGGPHDSGQYNQFPEDTGFFKREGTWNTEYGQFFLEWYSGKLLEHGERILVSAKGIFQTTGVKLSGKVAGIHWHYRARSHAAELTAGYYNTRHNDGYLPIARMLAKHGVVFNFTCMEMKDREQPDFAYCSPEGLVHQVKMATTTARAELAGENALERYDADAYAQVLSTSKSESGSGLAAFTYLRMNKRLFEGDNWRHLVDFVRNMSEGGRRERLPAADSHGSDLYVGHIKATREKHTQEAALV 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00639 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 119 133 IPR001554 GO:0000272|GO:0016161
Gma05g00639 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 140 158 IPR001554 GO:0000272|GO:0016161
Gma05g00639 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 162 183 IPR001554 GO:0000272|GO:0016161
Gma05g00639 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 254 276 IPR001554 GO:0000272|GO:0016161
Gma05g00639 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 329 348 IPR001554 GO:0000272|GO:0016161
Gma05g00639 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 365 381 IPR001554 GO:0000272|GO:0016161
Gma05g00639 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 382 393 IPR001554 GO:0000272|GO:0016161
Gma05g00639 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 400 423 IPR001554 GO:0000272|GO:0016161
Gma05g00639 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 437 459 IPR001554 GO:0000272|GO:0016161
Gma05g00639 547 Gene3D Glycosidases 74 543 - -
Gma05g00639 547 PANTHER BETA-AMYLASE 1 547 - -
Gma05g00639 547 ProSitePatterns Beta-amylase active site 1. 166 174 IPR018238 GO:0000272|GO:0016161
Gma05g00639 547 PANTHER - 1 547 IPR001554 GO:0000272|GO:0016161
Gma05g00639 547 Pfam Glycosyl hydrolase family 14 88 505 IPR001554 GO:0000272|GO:0016161
Gma05g00639 547 PRINTS Plant beta-amylase signature 244 253 IPR001371 GO:0000272|GO:0016161
Gma05g00639 547 PRINTS Plant beta-amylase signature 403 413 IPR001371 GO:0000272|GO:0016161
Gma05g00639 547 PRINTS Plant beta-amylase signature 485 499 IPR001371 GO:0000272|GO:0016161
Gma05g00639 547 SUPERFAMILY (Trans)glycosidases 83 512 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00639 Gma-Chr5 6915184 6919052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00639 1 547 Glycoside Hydrolase AT4G17090 71.767 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00639 K01177 - gmx:100818063 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00639 05 6915184 6919052 Gma05g00639 05 6915184 6919052 ECH
Gma17g01375 17 12653979 12657363 Gma05g00639 05 6915184 6919052 GST