Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01190 ATGGACCTCGGAACCTATGACGTGCCAGAAGGAGTGGACATTCTGGGAAGATACGATGCAGAGTTTGCAAAAATCCTCGCAAAAGATGCTTTGAAATTCGTTGCTGAACTGCAACGTGAGTTCCGGAACGATATCAAGCATGCATTAGAGCGCAGAAGAGAGGCAAAGAAGAAGTACAATGAAGGGTCTCTTCCGGGGTTTGATCCTGCCACCAGTGACATCAGAGAGCAGGAGTGGGTGTGTGCACCTGTTCCACCAGCTGCTGCTGATAGGAAAGTGGAGATCACTGGCCCTGTGGACAGAAAGATGGTCATCAATGCTCTCAACTCTGCAGCTAAAGTCTTTATGGCTGATTTAGAAGATGCACTGTCACCGACCTGGGAAAATCTTATTAGTGGTCAAGTGAACTTGAAGGATGCTGTGGATGGGACCATAAGCTTCCATGACAAAGTAAGGAACAGGATTTACAAGCTCAATGATCAGACAGCAAAGCTTTTTGTGAGACCAAGAGGTTGGCATCTACCTGAAGCACATATTCTGATTGATGGTGAACCTGCAACTGGTTGCCTTGTTGATTTTGGCCTCTACTTCTACCACAACCACTCAGCATTCCGGCGCACTCAAGGTGCCGGCTTTGGCCCTTTCTTTTATCTCCCCAAAATGGAGCATTCAAGGGAAGCTAAGATATGGAACAGCGTGTTTGAGAAGGCTGAGGATGTAGTAGGCATCAAAAGAGGAAGCATAAGGGCAACGGTTCTGATAGAAACACTTCCTGCAGTGTTTCAAATGAATGAAATTTTGTATGAGCTGAAAGAGCACTCGGTGGGTCTAAACTGTGGGCGTTGGGATTACATTTTCAGTTATGTTAAGACCTTCCAGGCTCACCCAGATCGCCTCCTACCAGACAGGGTTCAGGTTGGCATGACTCAACACTTCATGAAAAGCTACTCTGATCTCCTCATCAGGACGTGCCACAGGCGCGGTGTGCATGCTATGGGAGGAATGGCAGCACAGATTCCAATCAAAGATGACCCAGTGGCAAATGAGGCAGCACTGGAACTGGTAAGGAAGGACAAGCTTAGAGAAGTGAAGGCAGGGCACGATGGAACTTGGGCTGCACACCCTGGTCTCATTCCAGCCTGCATGGAGATTTTCAACAACAACATGGGCAATGCTTCCAACCAGATAGACACAGTGAAACGCGAAGATGCTGCAAACTTAACTGAACAAGACCTCTTGCAGATACCAATAGGAACCCGCACCATGGAAGGTCTCAGATTAAACACAAGGGTGGGCATTCAGTACCTGGCAGCGTGGCTCAGCGGAAGCGGTTGCGTGCCTCTTTACAACCTCATGGAGGATGCTGCCACTGCTGAGATTAGCAGGGTGCAGAACTGGCAGTGGCTCAAGTATGGAGTGGAGCTAGATGAAGATGGGCTTGGAGAGAAAGTGAACAAAGACCTTTTTGATAGAGTGGTTGAAGAAGAGATGGCTAGGATTGAAAAGGAAGTGGGAACAGAGAAGTTCGAGAAGGGAATGTACAAGGCGGCTTGCAAGATCTTCACTCGCCAATGCACGTCCCCAACTCTTGATGATTTTCTCACTTTGGATGCCTATAATTACATAGTTGTGCATCACGCCAAGGAAGGACCCGTCAAAGCTTTGAACTAA 1671 0.4794 MDLGTYDVPEGVDILGRYDAEFAKILAKDALKFVAELQREFRNDIKHALERRREAKKKYNEGSLPGFDPATSDIREQEWVCAPVPPAAADRKVEITGPVDRKMVINALNSAAKVFMADLEDALSPTWENLISGQVNLKDAVDGTISFHDKVRNRIYKLNDQTAKLFVRPRGWHLPEAHILIDGEPATGCLVDFGLYFYHNHSAFRRTQGAGFGPFFYLPKMEHSREAKIWNSVFEKAEDVVGIKRGSIRATVLIETLPAVFQMNEILYELKEHSVGLNCGRWDYIFSYVKTFQAHPDRLLPDRVQVGMTQHFMKSYSDLLIRTCHRRGVHAMGGMAAQIPIKDDPVANEAALELVRKDKLREVKAGHDGTWAAHPGLIPACMEIFNNNMGNASNQIDTVKREDAANLTEQDLLQIPIGTRTMEGLRLNTRVGIQYLAAWLSGSGCVPLYNLMEDAATAEISRVQNWQWLKYGVELDEDGLGEKVNKDLFDRVVEEEMARIEKEVGTEKFEKGMYKAACKIFTRQCTSPTLDDFLTLDAYNYIVVHHAKEGPVKALN 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01190 556 Gene3D Malate synthase, domain III 419 543 IPR044856 -
Gma17g01190 556 PIRSF Malate_synth 4 544 IPR006252 GO:0004474|GO:0006097
Gma17g01190 556 Pfam Malate synthase 13 543 IPR001465 GO:0004474|GO:0006097
Gma17g01190 556 Gene3D Malate synthase, domain 3 8 418 IPR046363 -
Gma17g01190 556 Coils Coil 382 402 - -
Gma17g01190 556 CDD malate_synt_A 25 543 IPR006252 GO:0004474|GO:0006097
Gma17g01190 556 ProSitePatterns Malate synthase signature. 271 286 IPR019830 GO:0004474|GO:0006097
Gma17g01190 556 SUPERFAMILY Malate synthase G 7 543 IPR011076 GO:0003824
Gma17g01190 556 PANTHER MALATE SYNTHASE 5 547 - -
Gma17g01190 556 PANTHER MALATE SYNTHASE 5 547 IPR006252 GO:0004474|GO:0006097
Gma17g01190 556 TIGRFAM malate_syn_A: malate synthase A 25 542 IPR006252 GO:0004474|GO:0006097
Gma17g01190 556 Coils Coil 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01190 Gma-Chr17 10441695 10445463 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01190 K01638 - gmx:100813906 1133.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01190 17 10441695 10445463 Gma17g01190 17 10441695 10445463 ECH
Gma17g01190 17 10441695 10445463 Gma05g00434 05 4121105 4124596 GST