Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01181 ATGGAAGGAGAAGAGGGTTCTCAGCAGCCACAGTTGGTGCTCGCGGACAAGCTATTCCTTCTCCGGCAACCCGATGTGCAAGACATTGACAAGGTTCGCTACAAAGAGGATGTCTTCACTCATGTCAAGGAAAACGATATGGTCCCTCTGTACGAAACCCTAGTCGCTGATTCCGTGTTGGACTTGGATCGTGCCCTTTTGGACTCTATGCGCGCTAAAATTGACGACGAGCTCACCAAGCTCGACGAAAAGATTGCTGATGCCGAGGAAAACTTAGGAGAGAGTGAAGTTCGTGAGGCTCATTTGGCAAAATCCTTGTTTTTCATCCGGATTATGGACAAGGAGAAAGCCTTGGAACATCTGAAGGTAACAGAAACCAAGACAGTTGCAGTTGGCCAGAAAATGGACTTGGTGTTTTATACATTGCAGCTTGGTTTCTTTGACATGGATTTTGATCTCATTTCCAAAAGCATAGACAAAGCCAAAAACTTGTTTGAGGAAGGTGGTGATTGGGAAAGGAAGAATAGGCTGAAAGTGTATGAAGGCCTGTACTGCATGTCCACTCGAAATTTCAAGAAGGCTGCCAAGTTATTTTTGGATTCTATTTCAACCTTCACCACCTATGAACTTTTTCCCTATGACACCTTTATATTTTATACTGTTTTGACCAGCATTATATCATTGGATAGAGTTTCCCTAAAGCAAAAGGTAGTAGATGCTCCAGAGATCTTGACAGTGATTGGCAAAATCCCATATCTTTCAGAGTTTTTGAACTCCTTATATGATTGCCAATACAAGTCTTTTTTCTCAGCATTTGCTGGCCTGACGGAGCAAATTAAGTTGGACCGCTATCTGCATCCACACTTCCGTTATTACATGAGGGAGGTCAGAACAGTTGTTTATTCCCAATTTTTGGAATCTTACAAGAGTGTGACAATTGAAGCCATGGCAAAAGCCTTTGGAGTGACAGTAGATTTCATTGATGTGGAGCTATCACGTTTTATTGCAGCAGGGAAGCTTCATTGTAAGATTGATAAAGTTGCAGGTGTTCTTGAAACTAATCGCCCTGATGCTAAGAATGCTCTTTACCAAGCAACTATTAAGCAAGGGGACTTCCTGCTGAATCGGATCCAGAAATTGTCACGTGTGATAGATCTTTAG 1161 0.4246 MEGEEGSQQPQLVLADKLFLLRQPDVQDIDKVRYKEDVFTHVKENDMVPLYETLVADSVLDLDRALLDSMRAKIDDELTKLDEKIADAEENLGESEVREAHLAKSLFFIRIMDKEKALEHLKVTETKTVAVGQKMDLVFYTLQLGFFDMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAAKLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01181 386 SMART PINT_4 287 370 IPR000717 -
Gma17g01181 386 Pfam 26S proteasome subunit RPN7 63 236 IPR045135 -
Gma17g01181 386 ProSiteProfiles PCI domain profile. 190 358 IPR000717 -
Gma17g01181 386 Pfam PCI domain 254 354 IPR000717 -
Gma17g01181 386 PANTHER 26S PROTESOME SUBUNIT 6 3 386 IPR019585 -
Gma17g01181 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 287 370 - -
Gma17g01181 386 SUPERFAMILY "Winged helix" DNA-binding domain 282 363 IPR036390 -
Gma17g01181 386 Coils Coil 71 98 - -
Gma17g01181 386 PANTHER BNAC08G11800D PROTEIN 3 386 - -
Gma17g01181 386 Gene3D - 26 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01181 Gma-Chr17 10353354 10356601 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01181 K03037 - gmx:100810692 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01181 17 10353354 10356601 Gma17g01181 17 10353354 10356601 ECH
Gma17g01181 17 10353354 10356601 Gma05g00423 05 4017726 4022378 GST