Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01173 atggcgaaagcacgcaagtcgcaagaagaaattgcgagtgaagccatcaagcatgctttgaaggctctgcggaagcgccatttgcttgaggaagctgctcatgctcccactgttctagctctttctagacccatcgtttctcagggctctgagtggaaagagaaagcagagaatcttcaaatggaacttcagcaatgctacaaagctcaatctcgcctgtctgagcaacttgttgtggaagtagctgagtccagagcttcgaaaacgtctcttcaagagaaagaaaatgcattggctgatctgcagaaggagttgactgaattgagggatgagtgctctcaattgaaggtggacttggaagaaaaaattaaatctctggaactggttgtcagtgagaattctgaacttaaagcacaactggagcagatgactactaaagccaataaagctgaagctgaaaacaagatgttgattgaccgctggatgttagaaaagatgaaggatgctgaacgcctaaatgagGCCAACACACTGTATGAAGAGATGGTTGAGAAACTAAGGGCCAGTGGTTTAGAACAACTTGCAAGGCAGCAGGTGGATGGTATAGTTCGCCGAAGTGAAGAAGGTGCTGAATTCTTTTTTGATTCAAACATCCCTTCCACATGTAAATACAGGCTTCGTGCACATGAAGGTGGTTGTGCTTCCATGTTGTTTGAGTACAATTCCAGTAAATTGATTACTGggggacaggatcgGTGGAGCGGAATTGCAAAACCCCTAGCTTCAGCTGATAAGAATGGGATTGTTTGCttttcagattgggtggctgaattctttatcactgttttatgttcatacaagGATACAAAGACCTCGCTGCAGTGGGGACAGACAGGAATGAGGCTCCTGACTGATTTACTGTTTTCATATCTCGCAGTGTGGACTTTGCAGGACTGCTGCAGTAAAGAACCTATGCAGGAATGTTGTAGCGAGGACCTGGAATCCGAGGAAGGGTTGTGGGATTTGTACGAGAGATGGAGGAGCCACCACACGGTTTCTCGAAGCCTCGATGAGAAGCACAACCGCTTCAACGTGTTCAAAGGCAACGTGATGCATGTCCACAGTTCCAATAAAATGGACAAGCCTTACAAGCTGAAGTTGAACAGGTTCGCTGACATGACCAACCATGAATTCAGGAGCATCTATGCTGGCTCCAAGGTTAATCATCACAGAATGTTCAGAGGCACGCCACGTGGGAATGGTACTttcatgtatcagaacgttgacagggttccttcttccgtagattggaggaagaaaggtgctgtcactgatgtaaaggatcaaggccaatgcggtagttgttgggcgttttcaactattgtagctgttgaaggtattaaccaaatcaagacacataagctagttcccttgtctgagcaagaacttgtagattgtgacactacacaaaatcaaggatgcaatggtgggttaatggaatctgcgttcgagtttatcaagcaatacggtataactacagcaagcaattacccttatgaagcaaaagatggaacttgtgatgcaTCAAAGGTGAATGAAcctgcagtgtcaattgatggccatgagaatgtccccgtgaacaatgaggccgcattgctcaaagctgttgcccatcaacctgtatcggtagccattgaagctgggggaattgacttccagttctattcaGAGggagtatttacgggaaactgtggcactgctctggatcatggggtagcaattgtgggctatggaacaactcaagatggaaccaaatattggacagtgaagaactcatggggatccgaatggggagaaaagggttacattagaatgaaaaggagcatatctgtcaagaaaggtctttgtggcatagcaatggaagcttcctatccaaTCAAAAAGTCCTCTAGCAAACCAAGGGAACATTCATCATATCCTAAAGACGAGCTTTAA 1995 0.1744 MAKARKSQEEIASEAIKHALKALRKRHLLEEAAHAPTVLALSRPIVSQGSEWKEKAENLQMELQQCYKAQSRLSEQLVVEVAESRASKTSLQEKENALADLQKELTELRDECSQLKVDLEEKIKSLELVVSENSELKAQLEQMTTKANKAEAENKMLIDRWMLEKMKDAERLNEANTLYEEMVEKLRASGLEQLARQQVDGIVRRSEEGAEFFFDSNIPSTCKYRLRAHEGGCASMLFEYNSSKLITGGQDRWSGIAKPLASADKNGIVCFSDWVAEFFITVLCSYKDTKTSLQWGQTGMRLLTDLLFSYLAVWTLQDCCSKEPMQECCSEDLESEEGLWDLYERWRSHHTVSRSLDEKHNRFNVFKGNVMHVHSSNKMDKPYKLKLNRFADMTNHEFRSIYAGSKVNHHRMFRGTPRGNGTFMYQNVDRVPSSVDWRKKGAVTDVKDQGQCGSCWAFSTIVAVEGINQIKTHKLVPLSEQELVDCDTTQNQGCNGGLMESAFEFIKQYGITTASNYPYEAKDGTCDASKVNEPAVSIDGHENVPVNNEAALLKAVAHQPVSVAIEAGGIDFQFYSEGVFTGNCGTALDHGVAIVGYGTTQDGTKYWTVKNSWGSEWGEKGYIRMKRSISVKKGLCGIAMEASYPIKKSSSKPREHSSYPKDEL 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01173 664 PRINTS Papain cysteine protease (C1) family signature 449 464 IPR000668 GO:0006508|GO:0008234
Gma17g01173 664 PRINTS Papain cysteine protease (C1) family signature 590 600 IPR000668 GO:0006508|GO:0008234
Gma17g01173 664 PRINTS Papain cysteine protease (C1) family signature 606 612 IPR000668 GO:0006508|GO:0008234
Gma17g01173 664 Coils Coil 84 160 - -
Gma17g01173 664 Pfam Papain family cysteine protease 431 646 IPR000668 GO:0006508|GO:0008234
Gma17g01173 664 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 588 598 IPR025660 -
Gma17g01173 664 Pfam Cathepsin propeptide inhibitor domain (I29) 343 398 IPR013201 -
Gma17g01173 664 Gene3D Cysteine proteinases 315 648 - -
Gma17g01173 664 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 323 652 - -
Gma17g01173 664 Coils Coil 56 76 - -
Gma17g01173 664 CDD Peptidase_C1A 432 645 IPR039417 -
Gma17g01173 664 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 449 460 IPR000169 -
Gma17g01173 664 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 323 652 - -
Gma17g01173 664 SUPERFAMILY WD40 repeat-like 221 319 IPR036322 GO:0005515
Gma17g01173 664 SMART Inhibitor_I29_2 343 398 IPR013201 -
Gma17g01173 664 SUPERFAMILY Cysteine proteinases 340 646 IPR038765 -
Gma17g01173 664 Gene3D - 89 162 - -
Gma17g01173 664 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 606 625 IPR025661 -
Gma17g01173 664 SMART pept_c1 431 646 IPR000668 GO:0006508|GO:0008234
Gma17g01173 664 Pfam Autophagy protein 16 (ATG16) 47 173 IPR013923 -
Gma17g01173 664 Coils Coil 169 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01173 Gma-Chr17 10248843 10256634 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01173 K16292 - gmx:100806581 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01173 17 10248843 10256634 Gma17g01173 17 10248843 10256634 ECH
Gma17g01173 17 10248843 10256634 Gma04g01850 04 48603760 48608416 PCT
Gma17g01173 17 10248843 10256634 Gma06g01558 06 15148398 15150049 PCT
Gma04g01850 04 48603760 48608416 Gma17g01173 17 10248843 10256634 PCT
Gma06g01558 06 15148398 15150049 Gma17g01173 17 10248843 10256634 PCT