Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01558 ATGGCAATGAAGAAGTTCTTGTGGGTTGTTCTGTCCCTTTCTTTGGTCCTTGGAGTGGCCAATAGCTTTGATTTTCACGACAAGGATTTGGAGTCCGAGGAAAGCCTGTGGGACTTGTACGAGAGATGGAGGAGTCACCACACGGTTTCGCGAAGCCTTGGTGACAAGCACAAGCGGTTTAACGTGTTCAAAGCGAATGTGATGCATGTCCATAACACCAACAAAATGGATAAGCCTTACAAGCTGAAACTAAACAAGTTTGCTGACATGACCAACCATGAATTCAGGAGTACCTATGCTGGCTCAAAGGTTAATCACCATAGAATGTTCAGAGACATGCCACGTGGGAACGGGACCTTCATGTATGAGAAGGTTGGTAGTGTTCCTGCTTCAGTGGATTGGAGGAAGAAAGGTGCTGTAACTGATGTAAAAGATCAAGGCCATTGTGGTAGTTGTTGGGCGTTTTCAACTGTTGTAGCTGTTGAAGGCATTAACCAAATCAAGACGAATAAGCTAGTCTCCTTGTCTGAACAAGAGCTGGTGGACTGTGACACCGAAGAAAATGCAGGATGCAATGGTGGGTTAATGGAATCTGCTTTCCAGTTCATCAAGCAGAAGGGAGGCATAACAACAGAAAGCTATTACCCTTACACAGCTCAAGATGGAACATGTGATGCATCCAAGGCAAATGACCTAGCTGTATCAATTGATGGCCATGAGAATGTACCTGGTAACGATGAAAATGCATTGCTCAAAGCTGTTGCCAACCAACCTGTTTCTGTAGCCATTGATGCCGGGGGATCTGATTTCCAGTTCTACTCCGAGGGAGTATTTACTGGTGATTGTAGCACGGAGCTAAATCATGGTGTGGCGATTGTGGGGTATGGAGCAACTGTTGATGGGACTAGTTACTGGATAGTGAGGAACTCTTGGGGACCAGAATGGGGAGAACAGGGTTACATCAGAATGCAAAGGAACATATCTAAAAAGGAGGGACTTTGTGGCATAGCTATGTTGGCTTCCTACCCAATCAAAAACTCCTCCAATAATCCAACAGGACCTTCATCATCTCCTAAAGATGAACTTTGA 1089 0.4509 MAMKKFLWVVLSLSLVLGVANSFDFHDKDLESEESLWDLYERWRSHHTVSRSLGDKHKRFNVFKANVMHVHNTNKMDKPYKLKLNKFADMTNHEFRSTYAGSKVNHHRMFRDMPRGNGTFMYEKVGSVPASVDWRKKGAVTDVKDQGHCGSCWAFSTVVAVEGINQIKTNKLVSLSEQELVDCDTEENAGCNGGLMESAFQFIKQKGGITTESYYPYTAQDGTCDASKANDLAVSIDGHENVPGNDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCSTELNHGVAIVGYGATVDGTSYWIVRNSWGPEWGEQGYIRMQRNISKKEGLCGIAMLASYPIKNSSNNPTGPSSSPKDEL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01558 362 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 351 - -
Gma06g01558 362 SUPERFAMILY Cysteine proteinases 33 344 IPR038765 -
Gma06g01558 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Gma06g01558 362 Pfam Papain family cysteine protease 128 344 IPR000668 GO:0006508|GO:0008234
Gma06g01558 362 Gene3D Cysteine proteinases 14 346 - -
Gma06g01558 362 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 20 351 - -
Gma06g01558 362 SMART Inhibitor_I29_2 40 95 IPR013201 -
Gma06g01558 362 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Gma06g01558 362 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Gma06g01558 362 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Gma06g01558 362 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Gma06g01558 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Gma06g01558 362 SMART pept_c1 128 344 IPR000668 GO:0006508|GO:0008234
Gma06g01558 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Gma06g01558 362 CDD Peptidase_C1A 129 343 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01558 Gma-Chr6 15148398 15150049 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01558 K16292 - gmx:547487 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01558 06 15148398 15150049 Gma06g01558 06 15148398 15150049 ECH
Gma04g01850 04 48603760 48608416 Gma06g01558 06 15148398 15150049 GST
Gma17g01173 17 10248843 10256634 Gma06g01558 06 15148398 15150049 PCT
Gma06g01558 06 15148398 15150049 Gma17g01173 17 10248843 10256634 PCT