Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01171 ATGAACGATTCCATAATCCTCAAGAAGCGCCATTGCATCACTAACCTGAAAACCCTAACACCCCACATCACCTGCCTCGCCGTCCACCGCAATCTCCTCTACGCCGCATCCCTCAACCTCATCAACGTCTTCGAACTCACCCATTACTCCCACATCGACTCCTTCAACCAAAGCCCCTCCTCAGGCTTCGTCAAGTCCATCACCTTCACCAACTCAAAAGTCTTCACCGCCCACCAAGACCGCAAGATTCGCGTCTGGCTCATCACTCCCTCAAAACGACACCGTCTCCTCTCCTCCCTCCCCACCGTAACGGACCGCCTGCGCCGCTGCATAGTACCCCGAAACTACGTTACCGTACGACGCCACAAGACGAGGCTCTGGATCAAACATTCTGACACCGTTTCGGGTTTGGCGGTTAACGAGAGGTTTATGTATTCGGTTTCGTGGGATAGAAGCTTTAAGGTGTGGGACTTGCTGAGTTACCGGTGTTTGGAGTCCGTTAAGGCGCACGAGGACGCGATTAATGCCGTTGCTGTTAACGGCGACGGCACTGTTTACACGGCGTCCGCGGATGGGAGCATTAAGGTTTGGAGGAGGGACGGCGAGGCGAAACGGCACAAGTTGGTGAGCAACATAGGGAGGCAGAAGTCAACGGTAAACGCACTTGCGTTGGAGGGTGGTGGGGCGGGGTTGTTTTCTGGCGGTTGCGATGGCGAGATATGCCGGTGGGAGTGTGGGAAGAACGGCATCGTTGAGATGGAGACTCTAAGGGGTCATGGTGGGGCCATATTGTGTCTGATCCACGTGGCGGGGTTGTTGGCGAGTGCGTCAGCGGATTTAACGGTTAGGATCTGGCAACGGGAGAGAGGGAGTACTAATGGGTATTTTTGCAGGGCTGTGTTGGAAGGGCACGAGAAACCGGTGAAGTCGTTGGTAGCATTTTCGGACGCTGAGGGTGAGAGAGACTCAAACGCCATTGTTACGCTCTTCAGTGGAAGCCTTGACGGGGAGATTAGGGAAATCACCTTCGAGTGTGTACAACCCTTAAATCCTTTCCTCCCTCTCTTCTCTTTACACCACAATTTTGATTTTCTAAATACCTACCTGACTTATTCTTCGTTCAAATTGGGTACACAGGATCTGATTCATTCCATTTTGAAGCGCTTTTGGACACTGCGAGCCCTTGAGCGTGAAAATGTTGAAGCTAACGACGCTCCGGACTCCGAGGTAGGAGTTGGAACATCCAAGAAGAATCGGTCAACTTCTGCTAATGCCAATGCTCTGAAGCTTACTAGTGAACTTCTCCGGATTTTTATCACAGAGGCTGTTCAACGTGCTGCTGCTACAGCAGAAGTAGAGGGTGCTAGTCAACTAGAACCTACTCATTTGGAGATTATTCTACCTCAGTTACTTTTAGATTTCTAA 1425 0.5137 MNDSIILKKRHCITNLKTLTPHITCLAVHRNLLYAASLNLINVFELTHYSHIDSFNQSPSSGFVKSITFTNSKVFTAHQDRKIRVWLITPSKRHRLLSSLPTVTDRLRRCIVPRNYVTVRRHKTRLWIKHSDTVSGLAVNERFMYSVSWDRSFKVWDLLSYRCLESVKAHEDAINAVAVNGDGTVYTASADGSIKVWRRDGEAKRHKLVSNIGRQKSTVNALALEGGGAGLFSGGCDGEICRWECGKNGIVEMETLRGHGGAILCLIHVAGLLASASADLTVRIWQRERGSTNGYFCRAVLEGHEKPVKSLVAFSDAEGERDSNAIVTLFSGSLDGEIREITFECVQPLNPFLPLFSLHHNFDFLNTYLTYSSFKLGTQDLIHSILKRFWTLRALERENVEANDAPDSEVGVGTSKKNRSTSANANALKLTSELLRIFITEAVQRAAATAEVEGASQLEPTHLEIILPQLLLDF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01171 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 167 197 IPR001680 GO:0005515
Gma17g01171 474 SUPERFAMILY WD40 repeat-like 11 345 IPR036322 GO:0005515
Gma17g01171 474 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 339 IPR045182 -
Gma17g01171 474 SMART WD40_4 160 198 IPR001680 GO:0005515
Gma17g01171 474 SMART WD40_4 205 244 IPR001680 GO:0005515
Gma17g01171 474 SMART WD40_4 294 342 IPR001680 GO:0005515
Gma17g01171 474 SMART WD40_4 48 87 IPR001680 GO:0005515
Gma17g01171 474 SMART WD40_4 249 286 IPR001680 GO:0005515
Gma17g01171 474 SMART WD40_4 9 45 IPR001680 GO:0005515
Gma17g01171 474 SMART WD40_4 121 157 IPR001680 GO:0005515
Gma17g01171 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 127 166 IPR001680 GO:0005515
Gma17g01171 474 Gene3D - 433 474 - -
Gma17g01171 474 Pfam WD domain, G-beta repeat 162 197 IPR001680 GO:0005515
Gma17g01171 474 Pfam WD domain, G-beta repeat 254 285 IPR001680 GO:0005515
Gma17g01171 474 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 8 339 - -
Gma17g01171 474 Pfam CENP-S associating Centromere protein X 417 474 IPR018552 GO:0006281|GO:0051382
Gma17g01171 474 Gene3D - 116 348 IPR015943 GO:0005515
Gma17g01171 474 Gene3D - 6 115 IPR015943 GO:0005515
Gma17g01171 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 167 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01171 Gma-Chr17 10223289 10228590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01171 64 286 Acyl Lipid Metabolism Gene Families AT3G18860 25.101 2.45e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01171 - - gmx:100811392 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01171 17 10223289 10228590 Gma17g01171 17 10223289 10228590 ECH
Gma17g01171 17 10223289 10228590 Gma05g00414 05 3893038 3894312 GST