Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00414 ATGTTCCCGCTTCAGCAACTCCCTTTTGCCACAATGAACGATTCCACAAACTACTGCGTGGCTTCCCTCAAAACCGTAACAGCCCACATCACCTGCCTGGCTGTCCACCGTAACCTCCTCTACGCCGCATCCCTCAACCTCATCAACGTCTTCGACCTGATTTCCCATTACTCCCACATCGACGCCTTCAACCAAAGTTCCACCTCAGGCTTCGTAAAGTCCATCACCTTCACCAATTCAAAAGTCTTCACCGCCCACCAAGACCGCAAGATTCGCGTCTGGCTCATCACTCCCTCAAAACGACACCGTCTCCTCTCCTCCCTCCCCACCGTAACCGACCGTCTGCGCCGCTGCATAGTACCCCGAAACTACGTTACCGTTCGCCGCCACAAGACGAGGCTTTGGATTCAGCATTGCGACACCGTTTCGGGTTTGGCGGTTAACCAGAGGTTTATGTATTCGGTTTCGTGGGATAGAAGCTTTAAGGTGTGGGACTTGTTGAGTTACCGGTGTTTGGAGTCCGTTAAGGCGCATGAGGACGCTATTAATGCCGTTGCCGTTAACGGCGACGGCACCGTTTACACGGCGTCCGCGGACGGGAGCATTAAGATTTGGAGGAGGGAAGGCGAGGCGAAACGGCACAAGTTGGTGAGCACCACAGGGAGGCGGAAGTCAACGGTCAACGCGCTTGCGTTGGACGGCGGTGGTGGCGCGGGGTTGTTTTCCGGCGGTTGCGACGGCGAGATCTGCCGGTGGGAGTGTGGGAAGAACGGCGTGGTGAAGATGGAGACGCTGAGGGGTCATGGTGGGGCCATACTGTGTCTAATCCACGTGGCGGGTTTGTTGGCGAGTGCGTCAGCAGATCTAACGGTTAGGATCTGGCGACGGGAGAGAGAGAGTAGTGGTGATGGTGGGTATTGTTGCAGGGCTGTGTTGGAAGGGCACGAGAAACCGGTGAAGTCGTTGGTGGCATTTTCGGACGGTGAGGGAGACTCAAACGGCGTCGTTACGCTCTTCAGTGGAAGCCTTGACGGGGAGATTAGGGTGTGGAGGGTGTAA 1059 0.5619 MFPLQQLPFATMNDSTNYCVASLKTVTAHITCLAVHRNLLYAASLNLINVFDLISHYSHIDAFNQSSTSGFVKSITFTNSKVFTAHQDRKIRVWLITPSKRHRLLSSLPTVTDRLRRCIVPRNYVTVRRHKTRLWIQHCDTVSGLAVNQRFMYSVSWDRSFKVWDLLSYRCLESVKAHEDAINAVAVNGDGTVYTASADGSIKIWRREGEAKRHKLVSTTGRRKSTVNALALDGGGGAGLFSGGCDGEICRWECGKNGVVKMETLRGHGGAILCLIHVAGLLASASADLTVRIWRRERESSGDGGYCCRAVLEGHEKPVKSLVAFSDGEGDSNGVVTLFSGSLDGEIRVWRV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00414 352 Gene3D - 114 352 IPR015943 GO:0005515
Gma05g00414 352 Gene3D - 11 113 IPR015943 GO:0005515
Gma05g00414 352 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 14 352 IPR045182 -
Gma05g00414 352 Pfam WD domain, G-beta repeat 308 350 IPR001680 GO:0005515
Gma05g00414 352 Pfam WD domain, G-beta repeat 263 294 IPR001680 GO:0005515
Gma05g00414 352 Pfam WD domain, G-beta repeat 170 205 IPR001680 GO:0005515
Gma05g00414 352 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Gma05g00414 352 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Gma05g00414 352 PRINTS G protein beta WD-40 repeat signature 338 352 IPR020472 -
Gma05g00414 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 205 IPR001680 GO:0005515
Gma05g00414 352 SUPERFAMILY WD40 repeat-like 17 351 IPR036322 GO:0005515
Gma05g00414 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 352 IPR001680 GO:0005515
Gma05g00414 352 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 175 205 - -
Gma05g00414 352 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 352 - -
Gma05g00414 352 SMART WD40_4 213 253 IPR001680 GO:0005515
Gma05g00414 352 SMART WD40_4 16 52 IPR001680 GO:0005515
Gma05g00414 352 SMART WD40_4 128 165 IPR001680 GO:0005515
Gma05g00414 352 SMART WD40_4 258 295 IPR001680 GO:0005515
Gma05g00414 352 SMART WD40_4 305 351 IPR001680 GO:0005515
Gma05g00414 352 SMART WD40_4 168 206 IPR001680 GO:0005515
Gma05g00414 352 SMART WD40_4 56 95 IPR001680 GO:0005515
Gma05g00414 352 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 14 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00414 Gma-Chr5 3893038 3894312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00414 165 351 Acyl Lipid Metabolism Gene Families AT3G18860 24.615 1.48e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00414 - - gmx:100784592 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00414 05 3893038 3894312 Gma05g00414 05 3893038 3894312 ECH
Gma17g01171 17 10223289 10228590 Gma05g00414 05 3893038 3894312 GST