Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01073 ATGCTTAGTGGGCCTGATCCAAGCCGAAAATCCACTCGCCTTTGTTGCCCCCAAAACCTTTCTTTCTGCTTCTCCCATCCATCGCTTCTGGAATCTCGTCATAGTTCTTTCAGTTGCCATATACCCTCTCTCTTTACCTCTCAGACACTACAAGAAGCCATGAAGGTGCGGTCATCTGTGAAGAAGATGTGTGAATTTTGTCAGATAGTTAAGCGCCGGGGACGAATCTATGTGATTTGCTCTGGGAACCCTAAGCACAAGCAACGACAGGGCATGGCAACATTTGCAAGTGAAGGCCCATCTCGACCAGTGTCCTCGGAAACAAGTAGCTGGAAGATGGGGATAAAGCCTGCTCAAATTGCGCGACCAGACAGCGACAGTAGTGCAGCAGACACGATAAAAATAAAAAAAGCTCCAAAATTCTATGTGGTGGTGGAGATGGTGATGATTACTGCTTGGATCACTGACCTTTTCGCTTGTATGGGTGGTTGTTTTGGATGCTGTGTGAAACCCACACCAATTATTGCCGTGGATGAGCCAGCAAAGGGACTAAGAATTCAGGGGCAGACAGTAAGAAAACCACACATATCAGATGGTTTCTGGAGTTCAAGCACTTGTGATCTGGATAACAGCAACATTCAATCTCAGAGAAGTATCTCGTCTGTCAGTACATCAAATCAAATTCTCTATCATAGCGGTGGAACTTCTACCCCAGGGGCCAATCCTGAATTTGTAAACCCAGGCAAGTTCTATATTGGCCTTCTTCTCTGGAATGAGAGCAGGCTTCAGTGGGTTGGAAGTGGCAAATCTAGGAAGCATGGCCAACAAAAAAGAGAACCCAGACTAAATTGGAATGCAACTTATGAAAGTTTGCTTGGAACTAGACAACCTTTCCCCAAGCCCATACCTTTATCTGAAATGGTTGAATTCCTGGTGGATGTTTGGGAGCGTGAAGGGATGTATGGTTGA 969 0.4572 MLSGPDPSRKSTRLCCPQNLSFCFSHPSLLESRHSSFSCHIPSLFTSQTLQEAMKVRSSVKKMCEFCQIVKRRGRIYVICSGNPKHKQRQGMATFASEGPSRPVSSETSSWKMGIKPAQIARPDSDSSAADTIKIKKAPKFYVVVEMVMITAWITDLFACMGGCFGCCVKPTPIIAVDEPAKGLRIQGQTVRKPHISDGFWSSSTCDLDNSNIQSQRSISSVSTSNQILYHSGGTSTPGANPEFVNPGKFYIGLLLWNESRLQWVGSGKSRKHGQQKREPRLNWNATYESLLGTRQPFPKPIPLSEMVEFLVDVWEREGMYG 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01073 322 ProSitePatterns Ribosomal protein L36 signature. 64 90 IPR000473 GO:0003735|GO:0005840|GO:0006412
Gma17g01073 322 PANTHER OS07G0479600 PROTEIN 147 321 - -
Gma17g01073 322 Hamap 50S ribosomal protein L36 [rpmJ]. 54 91 IPR000473 GO:0003735|GO:0005840|GO:0006412
Gma17g01073 322 Pfam Protein of unknown function (DUF4050) 205 280 IPR025124 -
Gma17g01073 322 Pfam Protein of unknown function (DUF4050) 282 321 IPR025124 -
Gma17g01073 322 PANTHER DUF4050 FAMILY PROTEIN 147 321 - -
Gma17g01073 322 SUPERFAMILY Ribosomal protein L36 54 91 IPR035977 GO:0003735|GO:0005840|GO:0006412
Gma17g01073 322 TIGRFAM rpmJ_bact: ribosomal protein bL36 54 91 IPR000473 GO:0003735|GO:0005840|GO:0006412
Gma17g01073 322 Pfam Ribosomal protein L36 54 91 IPR000473 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01073 Gma-Chr17 9216902 9227117 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01073 - - gmx:100812832 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01073 17 9216902 9227117 Gma07g00288 07 2488556 2492967 ECH
Gma17g01073 17 9216902 9227117 Gma08g01941 08 17414650 17420850 ECH
Gma17g01073 17 9216902 9227117 Gma13g03271 13 46696566 46699732 ECH
Gma17g01073 17 9216902 9227117 Gma15g00080 15 667213 675927 ECH
Gma17g01073 17 9216902 9227117 Gma17g02006 17 35967741 35974174 ECH
Gma17g01073 17 9216902 9227117 Gma04g00622 04 5688138 5691150 ECH
Gma17g01073 17 9216902 9227117 Gma06g00607 06 5507541 5511493 ECH
Gma17g01073 17 9216902 9227117 Gma17g01073 17 9216902 9227117 ECH
Gma17g01073 17 9216902 9227117 Gma13g01469 13 29420342 29422648 GST