Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00961 ATGTCTGTCCATCCCCAGTTGCAAGAGCTTTGCAGCATTGTCATGAGCACTGTTGGTGGGCTAGATGAGCTGGAGTTGAGTCTAAATAAGTTCAAAGATTCTTTAACTTCATCTCTTGTAGCTCAGGCTATTGATTCTAGTAAGCATGAGGCACAAACTAGAAGATTGCTCAGGTTCTTCTTATGGTCTTGTAAGAATTTGAGTCATCGTTTGGAAGACAAGGATTATAATCATGCTCTTCGAGTTTTTGCTGAAAAGAAAGACTACACGGCAATGGATATTTTGATGGGAGATCTCAAGAAGGAGGGTCGAGCCATGGATGCTGAGACTTTTAGTCTTGTAGCAGAGAATTTGGTTAAACTAGGAAAAGAAGATGAGGCATTGGGTATTTTCAAGAACTTAGACAAGTATAAGTGTTCTATAGATGAATTTACAGTTACTGCTATCGTTAATGCCCTTTGCTCCAAAGGGCATGGTAAGAGGGCTGAAGGGGTAGTTTGGCATCACAACGACAAGATTACAGGCACAAAACCTTGCATATATAGAAGTCTTCTTTATGGGTGGTCTGTGCAGAGGAATGTGAAGGAAGCTAGGAGAATTATTAAAGAGATGAAATCAAATGGGGTTAACCCAGATTTGTTATGCTACAACACATTCCTCAGGTGCCTTTGTGAACGGAATCTAAGACATAATCCTTCAGGACTTGTGCCTGAAGCTTTAAATGTCATGATGGAGATGAAGTCACATAATGTTTTCCCAACCTCAATCAGTTACAACATACTGCTTTCTTGTCTAGGGAAGACCAGAAGAGTTAAGGAATCTTGTCAAATACTTGAAACAATGAAAATTTCTGGTTGTGATCCTGATTGGGTCAGCTATTATCTTGTGGCAAAGGTGTTGTTTCTGAGTGGCAGGTTTGGTAAAGGGAAAGAGATGGTGGATCAAATGATTGGAAAAGGTTTGGTGCCAAACCATAAGTTTTACTACAGTTTGATTGGTATTCTCTGTGGGGTTGAAAGGGTAAATTATGCTCTTGAACTGTTTGAGAAAATGAAGAAAAGCTCAATGGGAGGTTATGGACCAGTATATGATGTGCTCATTCCAAAGCTTTGTAGAGGAGGGGATTTTGAAAAGGGAAGAGAGCTTTGGGATGAAGCCTCAGGTATGGGCATCACTCTTCAGTGCTCAGAGGATGTTTTAGATCCTTCAATAACAGAAGTTTACAAACCTACAAGGCCAGAAAAAAGCAGCCATGTGGACAGCTCAAGAGCCAATTTCTGTTCGCTGAATTACTTCAAGTTTGTCTTCGAATCTCCTTGTGCATTTACTATTTTTGAAACTATATATCCTCCAGAAAAGGTATATTCAATTCCCCCCAAATCTCGCGCCAACATGGGGCAAGAAAATCACCACAagcgcagcaccagcgcgagtttgccgacctccaccgcgcgaagccgcggcggcggcaacgcgcttccccgcggccgccagatccagaagaccttcaacaacatcaagatcaccatcctctgcggcttcgtcaccatcctcgtccttcgcggcaccatcggcgtcaacctcggctcctccgacaacgacgccgtcaaccagaacctcatcgaagaaaccaaccgcatcctcgccgagatccgatccgacgccgacccctccgatcccgacgaccagcaattcttcaaccctaacgacaccttcaccctcggccccaagatcgataattgggacactgagcgcaagaattggcttcaccaaaaccccgaataccctaatgtcatcggagaaatcttggattgcggtgaatacTGGGAGTTTTCTGTTTAG 1842 0.3132 MSVHPQLQELCSIVMSTVGGLDELELSLNKFKDSLTSSLVAQAIDSSKHEAQTRRLLRFFLWSCKNLSHRLEDKDYNHALRVFAEKKDYTAMDILMGDLKKEGRAMDAETFSLVAENLVKLGKEDEALGIFKNLDKYKCSIDEFTVTAIVNALCSKGHGKRAEGVVWHHNDKITGTKPCIYRSLLYGWSVQRNVKEARRIIKEMKSNGVNPDLLCYNTFLRCLCERNLRHNPSGLVPEALNVMMEMKSHNVFPTSISYNILLSCLGKTRRVKESCQILETMKISGCDPDWVSYYLVAKVLFLSGRFGKGKEMVDQMIGKGLVPNHKFYYSLIGILCGVERVNYALELFEKMKKSSMGGYGPVYDVLIPKLCRGGDFEKGRELWDEASGMGITLQCSEDVLDPSITEVYKPTRPEKSSHVDSSRANFCSLNYFKFVFESPCAFTIFETIYPPEKVYSIPPKSRANMGQENHHKRSTSASLPTSTARSRGGGNALPRGRQIQKTFNNIKITILCGFVTILVLRGTIGVNLGSSDNDAVNQNLIEETNRILAEIRSDADPSDPDDQQFFNPNDTFTLGPKIDNWDTERKNWLHQNPEYPNVIGEILDCGEYWEFSV 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00961 613 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 3 423 - -
Gma17g00961 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Gma17g00961 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Gma17g00961 613 MobiDBLite consensus disorder prediction 470 488 - -
Gma17g00961 613 Gene3D Tetratricopeptide repeat domain 15 171 IPR011990 GO:0005515
Gma17g00961 613 Gene3D Tetratricopeptide repeat domain 316 390 IPR011990 GO:0005515
Gma17g00961 613 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 3 423 - -
Gma17g00961 613 MobiDBLite consensus disorder prediction 459 496 - -
Gma17g00961 613 Pfam Pentatricopeptide repeat domain 181 222 IPR002885 -
Gma17g00961 613 Gene3D Tetratricopeptide repeat domain 176 315 IPR011990 GO:0005515
Gma17g00961 613 TIGRFAM PPR: pentatricopeptide repeat domain 180 212 IPR002885 -
Gma17g00961 613 TIGRFAM PPR: pentatricopeptide repeat domain 362 392 IPR002885 -
Gma17g00961 613 TIGRFAM PPR: pentatricopeptide repeat domain 256 290 IPR002885 -
Gma17g00961 613 TIGRFAM PPR: pentatricopeptide repeat domain 291 324 IPR002885 -
Gma17g00961 613 Pfam PPR repeat 256 286 IPR002885 -
Gma17g00961 613 Pfam PPR repeat 328 354 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00961 Gma-Chr17 8190342 8194633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00961 465 599 Glycosyltransferase AT5G07720 61.224 8.73e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00961 - - gmx:100814450 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00961 17 8190342 8194633 Gma17g00961 17 8190342 8194633 ECH
Gma17g00961 17 8190342 8194633 Gma05g00245 05 2213958 2216371 GST