Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00245 ATGCATGCCTTGTTGAAACCTGCGTGGAAACGCTTTTGGCTTCAAAATATGAGTACCCAGAATTTTCAAATATTTCCATTTTCTCATTATTCCACATTGCAGCCAATGTCTGTTCATCCCCAGTTGCAAGAGCTCTGCAACATTGTCATGAGCACTGTTGGTGGGCTAGATGAGCTGGAGTTGAGTCTAAGTAAGTTCAAAGATTCTTTAACTTCATCTCTTGTAGCTCAGGCTAACGATTCTACTAAGCATGAGGCACACACTAGAAGATTGCTCAGGTTCTTCTTATGGTCTATTAAGAATTTGAGTCAAAATTTGGAAGACAAGGATTATAATCATGCTCTTCAACTTTTTGCTGAAAAGAAAGACTACACGGCAATGGATATTTTGATGGGAGATCTCAAGAAGGAGGGTCGAGTCATGGATGCAGAAACTTTTGGTCCTGTAGCTGAGAATTTGGTTAAACTAGGAAAAGAAGATGAGGCATTGGGTATTTTCAAGAACTTAGACAAGTATAAGTGTCCTATAGATGAATTTACAGTTACTGCTATAGTTAATGCCCTTTGTTCCAAAGGGCATGCTAAGAGGGCTGGAGGGGTAGTTTTGCATCACAAAGACAAGATTACAGGAACAAAACCTTGCATATATAGAAGTATTCTTTATGGGTGGTGCCTTTGTGAACGGAATCTTAGACATAATCCTTCAGGACTTGTGTCTGAAGCTTTAAATGTCATAATGGAGATGAGGTCTTATAATGTTTTCCCAACCTCAATCAGTTACAACATACTGCTTTCTTGTCTAGGGAAGACCAGAAGAGTTAAGGAATCTCGTCATATACTTGAAACAATGAAAAATTCTGGTTGTGATCCTGATTGGCTCAGCTACTATCTTGTGGCAAAGGTGTTGTTTCTGAGTGGAAGGTTTGGTAAAGGGAAAGAGATGGTGGATCAAATGATTGGAAAAGGTTTGGTGCCAAACCCTAAGTTCTACTACAGTTTGATTGGTATTCTTTGTGGGATTGAAAGGGTAAATTATGCTCTTGAACTGTTTGAGAAAATGAAGAAAAGCTCAATGGGAGGTTATGGACCAGTTTATGATGTGCTCATTCCAAAGCTTTGTAGAGGAGGGGATTTTGAAAAGGGAAGAGAGCTTTGGGATGAAGCCACAGATATGGGCATCACTCTTCTGTGCTCAGAGGATGTTTTAGATCCTTCAAAAACAGAAGTTTACAAACCTACAAGGCCAGAAAAAAGCAGCCTTGTGGACAGCTCAAGAGTCAAGTCTCCAGAAAAAATTAACTACATATTAGTATTACTACAGGTGCATGTACTATTTTTGAAACTATCTCCTCCAGGTAGGACAATAGGACAGTGGCAGCAGAGAGGATGA 1389 0.396 MHALLKPAWKRFWLQNMSTQNFQIFPFSHYSTLQPMSVHPQLQELCNIVMSTVGGLDELELSLSKFKDSLTSSLVAQANDSTKHEAHTRRLLRFFLWSIKNLSQNLEDKDYNHALQLFAEKKDYTAMDILMGDLKKEGRVMDAETFGPVAENLVKLGKEDEALGIFKNLDKYKCPIDEFTVTAIVNALCSKGHAKRAGGVVLHHKDKITGTKPCIYRSILYGWCLCERNLRHNPSGLVSEALNVIMEMRSYNVFPTSISYNILLSCLGKTRRVKESRHILETMKNSGCDPDWLSYYLVAKVLFLSGRFGKGKEMVDQMIGKGLVPNPKFYYSLIGILCGIERVNYALELFEKMKKSSMGGYGPVYDVLIPKLCRGGDFEKGRELWDEATDMGITLLCSEDVLDPSKTEVYKPTRPEKSSLVDSSRVKSPEKINYILVLLQVHVLFLKLSPPGRTIGQWQQRG 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00245 462 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Gma05g00245 462 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 6 223 - -
Gma05g00245 462 Pfam PPR repeat 258 288 IPR002885 -
Gma05g00245 462 Pfam PPR repeat 330 356 IPR002885 -
Gma05g00245 462 TIGRFAM PPR: pentatricopeptide repeat domain 258 292 IPR002885 -
Gma05g00245 462 TIGRFAM PPR: pentatricopeptide repeat domain 364 393 IPR002885 -
Gma05g00245 462 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 224 426 - -
Gma05g00245 462 Gene3D Tetratricopeptide repeat domain 210 402 IPR011990 GO:0005515
Gma05g00245 462 Gene3D Tetratricopeptide repeat domain 52 208 IPR011990 GO:0005515
Gma05g00245 462 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 224 426 - -
Gma05g00245 462 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 6 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00245 Gma-Chr5 2213958 2216371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00245 145 422 Glycosyltransferase AT1G05670 22.302 1.08e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00245 - - gmx:100814450 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00961 17 8190342 8194633 Gma05g00245 05 2213958 2216371 GST