Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00956 ATGGCTGCAACCTCTTCCTTGTGCTCATCGACCCTCCAATCCCAGATCAATGGATTCTTCCTTCACAAAACCTCTCTTTCCCATACTCCTTCCCTCACTTTCTCCAGGAGGAAAATTTCAACCACAGTGAAGGCTACATCTCGAGTCGACAAGTTTTCAAAAAGCGATATCATTGTCTCTCCGTCCATTCTTTCTGCAAACTTTTCAAAATTGGGAGAGCAGGTGAAAGCAGTGGAATTGGCTGGTTGTGATTGGATTCACGTTGATGTAATGGATGGTCGCTTTGTTCCAAATATTACAATTGGACCTCTTGTGGTTGATGCATTGCGCCCTGTGACAGATCTTCCTTTGGATGTACACCTGATGATTGTAGAGCCTGAACAAAGGGTACCAGATTTTATTAAGGCAGGAGCTGATATAGTCAGTGTTCATTGTGAACAATCTTCCACCATCCATTTGCATCGTACAGTTAATCAAGTGAAAAGTCTGGGAGCTAAAGCTGGAGTTGTCTTAAACCCCGGTACCCCCTTAAGTGCAATAGAATATATCCTTGATGTGGTTGATTTGGTCTTAATTATGTCCGTAAACCCTGGCTTTGGTGGCCAGAGTTTTATTGAGAGTCAAGTAAAGAAAATTTCTGATTTGAGAAGATTGTGTGCGGAGAAGGGAGTGAATCCATGGATTGAAGTAGATGGTGGAGTTGGTCCAGCAAATGCATACAAGGTGATTGAGGCTGGAGCCAATGCACTGGTTGCTGGCTCTGCTGTTTTTGGAGCTAAAGATTATGCCGAAGCTATAAGAGGAATCAAAACCAGCAAAAGACCTGAAGTAGTTGCTGTGTGA 843 0.433 MAATSSLCSSTLQSQINGFFLHKTSLSHTPSLTFSRRKISTTVKATSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQVKSLGAKAGVVLNPGTPLSAIEYILDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIRGIKTSKRPEVVAV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00956 280 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 190 212 IPR000056 GO:0005975|GO:0016857
Gma17g00956 280 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 17 267 IPR000056 GO:0005975|GO:0016857
Gma17g00956 280 PANTHER - 17 267 - -
Gma17g00956 280 Hamap Ribulose-phosphate 3-epimerase [rpe]. 56 272 IPR026019 GO:0004750|GO:0006098
Gma17g00956 280 Gene3D Aldolase class I 47 276 IPR013785 -
Gma17g00956 280 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 86 100 IPR000056 GO:0005975|GO:0016857
Gma17g00956 280 CDD RPE 58 270 IPR000056 GO:0005975|GO:0016857
Gma17g00956 280 Pfam Ribulose-phosphate 3 epimerase family 59 257 IPR000056 GO:0005975|GO:0016857
Gma17g00956 280 SUPERFAMILY Ribulose-phoshate binding barrel 51 273 IPR011060 -
Gma17g00956 280 TIGRFAM rpe: ribulose-phosphate 3-epimerase 59 270 IPR026019 GO:0004750|GO:0006098
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00956 Gma-Chr17 8158530 8161900 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00956 K01783 - gmx:100817791 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00956 17 8158530 8161900 Gma17g00956 17 8158530 8161900 ECH
Gma17g00956 17 8158530 8161900 Gma05g00249 05 2241393 2244911 GST