Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00249 ATGTTATCTTCACCTGGGAGGACTGTGACAACTTGTTATGCTGTTGATGGTTCTGTTTATTTGCTACCCTTGCTATTAGATTTGATAATGCTCATGAGGTTTGGGAATTCGTTAATGGGGAAGAAAATTTCAACCACAGTGAAGGCTACATCTCGTGTTGACAAGTTTTCAAAAAGCGATATCATTGTTTCTCCATCCATTCTTTCTGCAAACTTTGCAAAATTGGGAGAGCAGGTGAAAGCAGTGGAGTTGGCTGGTTGTGATTGGATTCACGTTGATGTAATGGATGGCCGTTTTGTTCCAAATATTACAATTGGACCTCTTGTGGTTGATGCATTGCGCCCTGTGACAGATCTTCCTTTGGATGTACACCTGATGATTGTAGAGCCTGAACAAAGGGTACCAGATTTTATTAAGGCAGGAGCTGATATAGTCAGTGTTCATTGTGAACAATCTTCCACCATCCATTTGCATCGTACTGTTAATCAAGTGAAAAGTCTGGGAGCTAAAGCTGGAGTTGTCTTAAACCCTGCTACCCCCTTAAGTGCAATAGAATATGTCCTTGATGTGGTGGATTTGGTCTTAATTATGTCCGTAAACCCTGGCTTTGGTGGCCAGAGTTTTATTGAGAGTCAAGTAAAGAAAATTTCTGACTTGAGAAGAGTGTGCGCGGAAAAGGGAGTGAATCCATGGATTGAAGTAGATGGTGGAGTTGGTCCAGCAAATGCTTACAAGGTGATTGAGGCTGGAGCCAATGCTCTGGTTGCAGGCTCTGCTGTGTTTGGAGCTAAAGATTATGCCGAAGCTATAAGAGGAATCAAAACCAGCAAAAGACCTGAAGCAGTTGCTGTGTGA 855 0.4246 MLSSPGRTVTTCYAVDGSVYLLPLLLDLIMLMRFGNSLMGKKISTTVKATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQVKSLGAKAGVVLNPATPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRVCAEKGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIRGIKTSKRPEAVAV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00249 284 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 90 104 IPR000056 GO:0005975|GO:0016857
Gma05g00249 284 PANTHER - 39 271 - -
Gma05g00249 284 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 39 271 IPR000056 GO:0005975|GO:0016857
Gma05g00249 284 Pfam Ribulose-phosphate 3 epimerase family 63 261 IPR000056 GO:0005975|GO:0016857
Gma05g00249 284 Hamap Ribulose-phosphate 3-epimerase [rpe]. 60 276 IPR026019 GO:0004750|GO:0006098
Gma05g00249 284 TIGRFAM rpe: ribulose-phosphate 3-epimerase 63 274 IPR026019 GO:0004750|GO:0006098
Gma05g00249 284 Gene3D Aldolase class I 51 280 IPR013785 -
Gma05g00249 284 CDD RPE 62 274 IPR000056 GO:0005975|GO:0016857
Gma05g00249 284 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 194 216 IPR000056 GO:0005975|GO:0016857
Gma05g00249 284 SUPERFAMILY Ribulose-phoshate binding barrel 55 277 IPR011060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00249 Gma-Chr5 2241393 2244911 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00249 K01783 - gmx:100786514 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00249 05 2241393 2244911 Gma05g00249 05 2241393 2244911 ECH
Gma17g00956 17 8158530 8161900 Gma05g00249 05 2241393 2244911 GST