Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00948 ATGAACTCCATAGCCTTCAAATCCTTCGTCGGCCTCCGCCAGTCCTCGCCGGAGGCCCCACATTTCGCTGCCCAGTCCCGCCCCGCCACTCCCCACCGCAAATTCCGCGTCGTGGCCGGAAAATTCAGCCCCAGGCTGAACGGCCGGAACCTCCGCGTGGCGGTGGTGGGCGGCGGTCCCGCCGGAGGAGCCGCCGCGGAGACGCTGGCGAAGGGCGGCGTGGAGACGTTCCTGATCGAGCGAAAAATGGACAACTGCAAGCCGTGCGGCGGCGCCATCCCGCTGTGCATGGTGGGGGAGTTCGACCTTCCGCTGGACATCATCGACCGGCGCGTGACGAAGATGAAGATGATATCGCCGTCGAACGTGGCGGTGGACATCGGGAGGACGCTGAAGCCGCACGAGTACATCGGCATGGTGCGGCGCGAGGTGCTCGACGCTTACCTAAGGGACCGCGCCAAGGAGAACGGCGCCAACGTCATCAACGGCTTGTTCTTGAAAATGGATATTCCTAAGGATAATAACTCCCCCTACGTTCTGCATTACTCTAGCTACGACGGGAAAACCAATGGAGCTGGTGAGAAGCGTACCTTGGAAGTTGACGCTGTCATTGGCGCCGATGGGGCCAATTCTAGAGTCGCCAAGTCTATCGATGCCGGTGATTATGAGTATGCCATCGCTTTTCAGGAGAGGGTAAGAATTCCGGATGATAAGATGGTGTATTACGAGAATCTTGCGGAGATGTACGTGGGGGATGATGTTTCTCCGGATTTCTATGGATGGGTGTTTCCGAAATGTGACCATGTGGCTGTTGGCACTGGTACCGTGACACACAAGGGAGACATCAAGAAGTTCCAACTAGCAACAAGGAAAAGAGCAGAGGACAAGATTTTGGGAGGCAAGATCATCCGAGTGGAGGCTCACCCTATCCCGGAACATCCTCGGCCGCGAAGGTTGTCGGGAAGAGTGGCGTTGGTTGGTGATGCTGCTGGCTATGTAACCAAATGCTCTGGAGAGGGGATCTATTTTGCAGCCAAGAGTGGCAGGATGTGTGCAGAGGCAATTGTTGAAGGTTCTGAGAATGGAAAAAGGATGGTGGAAGAAGGGGACTTGAGGAAGTACTTGGAGAAGTGGGACAAGACTTATTGGCCAACTTACAAGGTCTTGGATATTCTTCAGAAGGTGTTTTATAGGTCCAACCCTGCAAGGGAAGCGTTTGTGGAGATGTGTGCTGATGAGTATGTGCAGAAGATGACCTTTGATAGCTATTTGTACAAGACGGTGGTGCCTGGCAATCCATTGGAGGATCTGAAATTGGCCATTAACACCATTGGGAGCTTAGTGAGAGCCAATGCAATAAGGAGGGAGATGAAGAAACTTAATGAGAGTGAAGAAGTATTTTGCGTTTATTTATTCAGCATTCGGCGGAGATTTCAAACCCAACTTGGCTTGTTCCAATTCCATTCATTCGTTCATTCCCAGGTTGTGATGGCAGCAGCACCAGCAGCTACCTTCGCTATTGGAACCACCGGTTCCCTCGGCCAAAGAGGAAGCTCGCTTCCTCAATCAAAGTCCTTTGGGTTGAAATTCAACTCTCTGAATCATTTGAAGAGCTTCTGTGGCCTCAAGGCCATGTCATCCGTGAGATGTGAGTCGGAATCCTCCTTCTTCGGTAACAAAACCGGTGCTGCTCTACGGGCGTCTTTTGCATCCAAAGCTCAAAAGGAAAACAACCACAACTCGCAGCCTCAGGCTTCGTACAAAGTTGCGGTTCTTGGTGCTGCTGGAGGGATAGGTCAGCCGCTCTCGCTTCTCATCAAGATGTCGCCTTTAGTTTCCAACCTGCATCTCTATGATATTGCGAATGTCAAGGGAGTTGCTGCTGATATCAGTCACTGCAACACACCCTCACAGGTCAGGGATTTCACTGGAGCTTCTGAGTTGCCGAATTGTTTGAAGGATGTGAATGTTGTTGTCATACCCGCCGGTGTTCCAAGGAAGCCTGGCATGACTCGTGACGACCTTTTCAACATCAATGCTGGCATTGTCAGGGACTTGGTTTCTGCTGTTGCGGATTACTGCCCTGATGCTTTTGTTCAAATTATCAGTAACCCTGTGAACTCTACCGTGCCTATTGCCGCAGAAGTTTTGAAACAGAAGGGTGTGTATGATCCTAAGAAGCTCTTTGGGGTTACCACACTGGATGTTGTGCGGGCAAACACGTTTGTTGCTCAGAGGAAGAACCTGAAGCTGATTGACGTTGATGTCCCAGTTGTTGGTGGCCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCGGCGAGTTTCACTGATGAAGAAATTGATGAGTTGACTGTCAGGATTCAAAGCGCTGGAACTGAAGTTGTTGAAGCAAAGGCAGGCACAGGGTCTGCTACCTTGTCGATGGCATATGCTGCTGCTAGATTTGTTGAATCGTCTCTTCGCGCACTTGATGGAGATGGGGATGTGTATGAGTGCTCATTTGTGGAATCAAACTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAACTTGGTAGGACAGGAGTTGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGACTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCTGAACTCAAGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAACTGTTGCTGCTTAA 2718 0.5103 MNSIAFKSFVGLRQSSPEAPHFAAQSRPATPHRKFRVVAGKFSPRLNGRNLRVAVVGGGPAGGAAAETLAKGGVETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRDRAKENGANVINGLFLKMDIPKDNNSPYVLHYSSYDGKTNGAGEKRTLEVDAVIGADGANSRVAKSIDAGDYEYAIAFQERVRIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRKRAEDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVEEGDLRKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKTVVPGNPLEDLKLAINTIGSLVRANAIRREMKKLNESEEVFCVYLFSIRRRFQTQLGLFQFHSFVHSQVVMAAAPAATFAIGTTGSLGQRGSSLPQSKSFGLKFNSLNHLKSFCGLKAMSSVRCESESSFFGNKTGAALRASFASKAQKENNHNSQPQASYKVAVLGAAGGIGQPLSLLIKMSPLVSNLHLYDIANVKGVAADISHCNTPSQVRDFTGASELPNCLKDVNVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADYCPDAFVQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEIDELTVRIQSAGTEVVEAKAGTGSATLSMAYAAARFVESSLRALDGDGDVYECSFVESNLTDLPFFASRVKLGRTGVEALIPSDLQGLTDYEQKALEALKPELKASIEKGIAFAQKQTVAA 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00948 905 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 578 731 IPR036291 -
Gma17g00948 905 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 732 897 IPR022383 GO:0016616
Gma17g00948 905 PANTHER MALATE AND LACTATE DEHYDROGENASE 521 905 - -
Gma17g00948 905 CDD MDH_glyoxysomal_mitochondrial 587 898 IPR010097 GO:0006099|GO:0030060
Gma17g00948 905 ProSitePatterns Malate dehydrogenase active site signature. 731 743 IPR001252 GO:0006108|GO:0016615
Gma17g00948 905 TIGRFAM ChlP: geranylgeranyl reductase 51 449 IPR011774 GO:0045550
Gma17g00948 905 Pfam lactate/malate dehydrogenase, NAD binding domain 588 730 IPR001236 GO:0016491
Gma17g00948 905 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 521 905 - -
Gma17g00948 905 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 199 214 - -
Gma17g00948 905 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 52 74 - -
Gma17g00948 905 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 335 - -
Gma17g00948 905 Gene3D - 732 903 IPR015955 GO:0003824|GO:0016616
Gma17g00948 905 SUPERFAMILY LDH C-terminal domain-like 731 898 IPR015955 GO:0003824|GO:0016616
Gma17g00948 905 Gene3D - 50 471 IPR036188 -
Gma17g00948 905 Pfam FAD binding domain 52 84 IPR002938 GO:0071949
Gma17g00948 905 SUPERFAMILY FAD/NAD(P)-binding domain 51 433 IPR036188 -
Gma17g00948 905 TIGRFAM GG-red-SF: geranylgeranyl reductase family 53 355 IPR011777 GO:0016628
Gma17g00948 905 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 588 899 IPR010097 GO:0006099|GO:0030060
Gma17g00948 905 TIGRFAM BchP-ChlP: geranylgeranyl reductase 52 449 IPR010253 GO:0015979|GO:0015995|GO:0045550
Gma17g00948 905 Gene3D - 585 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00948 Gma-Chr17 8081048 8088301 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00948 K10960 - gmx:100814603 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00948 17 8081048 8088301 Gma17g00948 17 8081048 8088301 ECH
Gma17g00948 17 8081048 8088301 Gma05g00256 05 2323137 2327731 GST