Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00256 ATGAACTCCATAGCCTTCAAATCCTTCGTCGGCCTCCGCCAGTCCTCGCCGGAGGCCCCGCATTTCGCCGCCCAGCCAAGACCCGCCACTCCCCACCGCAAATTCCGCGTCTTGGCTGGAAAATTCAGCCCCAAGCTCAATGGCCGGAACCTCCGCGTGGCGGTGGTGGGAGGCGGTCCGGCTGGCGGGGCCGCCGCGGAGACGCTGGCGAAGGGCGGCGTGGAGACGTTCCTGATCGAGCGAAAGATGGACAACTGCAAGCCGTGCGGTGGCGCCATCCCGCTGTGCATGGTGGGGGAGTTCGACCTGCCGCTGGACATCATCGACCGGCGCGTGACGAAGATGAAGATGATATCGCCGTCGAACGTGGCGGTGGACATCGGGAGGACGCTGAAGCCGCACGAGTACATCGGCATGGTGCGGCGCGAGGTGCTGGACGCTTACCTCAGGGACCGCGCCAAGGAGTACGGTGCGAACGTCATCAATGGCTTGTTCTTGAAAATGGATATTCCTAAGGATAAGAACTCCCCCTACGTTCTGCATTACTCTAGCTACGATGGCAAAACCAATGGGGCTGGTGAGAAGCGTACCTTGGAAGTTGACGCTGTCATTGGCGCTGACGGGGCTAATTCTAGAGTCGCCAAGTCTATTGATGCCGGTGATTATGAGTATGCCATCGCTTTTCAGGAGAGGGTAAAAATCCCGGATGATAAGATGGTGTATTACGAGAACCTTGCGGAGATGTACGTGGGCGATGATGTTTCTCCAGATTTCTACGGGTGGGTGTTTCCAAAATGTGACCATGTGGCTGTAGGCACTGGAACTGTGACACACAAGGGGGACATCAAGAAGTTCCAACTAGCAACAAGGAAAAGAGCAGAGGACAAGATTTTGGGAGGCAAGATCATCCGAGTGGAGGCTCACCCTATCCCGGAACATCCTCGGCCACGAAGGTTGTTGGGGAGAGTGGCGCTGGTTGGCGACGCTGCTGGCTACGTAACCAAATGCTCCGGAGAGGGGATCTATTTTGCAGCCAAGAGTGGGAGGATGTGTGCAGAGGCAATTGTTGAAGGTTCTGAGAATGGGAAAAGGATGGTGGAAGAAGGGGACTTGAGGAAGTACTTGGAGAAGTGGGACAAGACTTATTGGCCAACTTACAAGGTCTTGGATATTCTTCAGAAGGTGTTTTATAGGTCCAACCCTGCAAGGGAAGCGTTTGTGGAGATGTGTGCTGATGAGTATGTGCAGAAGATGACCTTTGATAGCTACTTGTACAAGACAGTGGTGCCTGGCAATCCATTGGAGGATCTGAAATTGGCCATTAACACCATTGGGAGCTTAGTGAGGGCCAATGCCATAAGGAGGGAGATGAACAAACTTAACGCGGAGATTTCAAACACAACTTCGCTTATTAAATCTCTTCTTCCAATTCCTTCTTTCATTCATTCCCAGGCTGAGATGGCAGCGGCACCAGCAGCTACCTTCACTATTGGAACCACCGGTTCCCTAGGCCAAAGAGGAAACTCGCTTCCTCAATTAAAGTCTTCTGGGTTGAAATTCAACTCCCAGAATCATTTGAAGAGCTTCTGCGGCCTCAAGGCCATGTCATCCGTGAGATGTGAGTCAGAATCGTCTTTCTTGGTTAACAAAACTGGTGCTGCTCTGCGGGCGTCTTTTGCATCCAAGGCTCAAAAGGAAAACGACCAAAACTTCAACTACAACTCGCAGCCTCAGGCTTCGTACAAAGTTGCAGTTCTTGGTGCTGCTGGAGGGATAGGTCAGCCACTCGCGCTTCTCATCAAGATGTCGCCTCTAGTTTCCGACCTGCATCTCTATGATATTGCGAATGTCAAGGGAGTTGCTGCTGATATCAGTCACTGCAACACCCCCTCACAAGTCAGGGATTTCACTGGAGCTTCTGAGTTGGCGAATTGTTTGAAGGATGTGAATGTTGTTGTCATACCCGCCGGTGTTCCAAGGAAGCCTGGCATGACTCGTGATGACCTTTTCAACATCAATGCCGGCATAGTCAGGGACTTGGTTTCTGCTGTTGCGGATAATAGCCCTGATGCTTTTATTCAAATCATCAGTAACCCTGTGAACTCTACCGTGCCTATTGCCGCAGAAGTTTTGAAACAGAAGGGTGTGTATGATCCTAAGAAGCTCTTTGGTGTTACCACACTGGATGTTGTGAGGGCAAACACATTTGTTGCTCAGAGGAAGAACCTTAAGCTGATTGATGTTGATGTCCCCGTTGTTGGTGGGCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCAGCGAGTTTCACTGATGAAGAAATTGAGGAGTTGACTGTCAGGATTCAAAATGCTGGAACTGAAGTTGTTGAAGCAAAGGCAGGTGCAGGGTCTGCTACCTTGTCAATGGCGTATGCAGCAGCTAGATTTGTTGAATCGTCTCTTCGTGCCCTTGATGGAGATGGGGATGTGTATGAGTGCTCATATGTGGAATCAGATTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAGCTTGGTAGGAAAGGAGTTGAGGCATTAATTCCATCTGACCTCCAAGGGTTGACTGACTATGAGCAGAAGGCTTTGGAATCACTTAAGCCAGAACTCATGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAGCTGTTGCTGCTTAA 2700 0.5085 MNSIAFKSFVGLRQSSPEAPHFAAQPRPATPHRKFRVLAGKFSPKLNGRNLRVAVVGGGPAGGAAAETLAKGGVETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRDRAKEYGANVINGLFLKMDIPKDKNSPYVLHYSSYDGKTNGAGEKRTLEVDAVIGADGANSRVAKSIDAGDYEYAIAFQERVKIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRKRAEDKILGGKIIRVEAHPIPEHPRPRRLLGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVEEGDLRKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKTVVPGNPLEDLKLAINTIGSLVRANAIRREMNKLNAEISNTTSLIKSLLPIPSFIHSQAEMAAAPAATFTIGTTGSLGQRGNSLPQLKSSGLKFNSQNHLKSFCGLKAMSSVRCESESSFLVNKTGAALRASFASKAQKENDQNFNYNSQPQASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSQVRDFTGASELANCLKDVNVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADNSPDAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEIEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSYVESDLTDLPFFASRVKLGRKGVEALIPSDLQGLTDYEQKALESLKPELMASIEKGIAFAQKQAVAA 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00256 899 TIGRFAM GG-red-SF: geranylgeranyl reductase family 53 355 IPR011777 GO:0016628
Gma05g00256 899 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 582 893 IPR010097 GO:0006099|GO:0030060
Gma05g00256 899 Pfam lactate/malate dehydrogenase, NAD binding domain 582 724 IPR001236 GO:0016491
Gma05g00256 899 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 511 899 - -
Gma05g00256 899 SUPERFAMILY LDH C-terminal domain-like 725 892 IPR015955 GO:0003824|GO:0016616
Gma05g00256 899 Coils Coil 450 470 - -
Gma05g00256 899 SUPERFAMILY FAD/NAD(P)-binding domain 51 433 IPR036188 -
Gma05g00256 899 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 221 IPR023753 GO:0016491
Gma05g00256 899 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 52 74 - -
Gma05g00256 899 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 199 214 - -
Gma05g00256 899 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 335 - -
Gma05g00256 899 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 570 725 IPR036291 -
Gma05g00256 899 TIGRFAM BchP-ChlP: geranylgeranyl reductase 52 449 IPR010253 GO:0015979|GO:0015995|GO:0045550
Gma05g00256 899 Gene3D - 726 897 IPR015955 GO:0003824|GO:0016616
Gma05g00256 899 Gene3D - 50 474 IPR036188 -
Gma05g00256 899 PANTHER MALATE AND LACTATE DEHYDROGENASE 511 899 - -
Gma05g00256 899 CDD MDH_glyoxysomal_mitochondrial 581 892 IPR010097 GO:0006099|GO:0030060
Gma05g00256 899 Gene3D - 579 725 - -
Gma05g00256 899 TIGRFAM ChlP: geranylgeranyl reductase 51 449 IPR011774 GO:0045550
Gma05g00256 899 ProSitePatterns Malate dehydrogenase active site signature. 725 737 IPR001252 GO:0006108|GO:0016615
Gma05g00256 899 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 726 891 IPR022383 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00256 Gma-Chr5 2323137 2327731 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00256 K10960 - gmx:100779933 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00256 05 2323137 2327731 Gma05g00256 05 2323137 2327731 ECH
Gma17g00948 17 8081048 8088301 Gma05g00256 05 2323137 2327731 GST