Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00885 ATGGTTTCCGATTCAATCGCCGCCGTGCCGATTCCCTCCGCCGCAAACACCAGGAACCCGGGGAAGAAGAAGAGGACCAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAGGTGCGGTGAAGAGCAAGGGGTACAAGGACGGTTTGGACGATGACGGCCATGCGCCGCCGTCTCCAGCGGAGGTGAAACACTCGGTGGAGCCTCTGAACACGAGGCGCAGAGGCGAAGAGGACGATGGATTGATCCATCACGACAGCGATTCGGAGTCTCCAACCAACTGCCCTGCGGGCGTGTTGTGCGGCACCGATTcggggacgaatttcaccggcagcagtagcggcggtagcagcagtagcagcagcagcagcagttccagcagcggcgggtgctgttccgggaacgtcaccgaGGTGGAGGAAGAAGAGGAAGGTGATGACGATGACGATGATGATGATGGATGTTTGGATGATTGGGAGGCTATGGCTGATGCTCTAGCAGCCGATGACAAGCGCGAAAACCCTTGTCCAGATTCGCCCCCAGTGGTTTCGCCTTCAGAGGGATCCAATTTAGGGTCTCCGAATTCGAAACCCGAGAGTGGTAGATTGTTTCCTTGGGGCTCTGGTAATAGCAGAGCGTGGAGGGCAGATGATGCCTTTCGCCCTCAGAGTTTGCCCAATTTGTCTAAGCAGCACAGTATGCCAAATCCTGATCGGCGTGGGGTGCCTTGGGGACGCGCTCCCACCCCATCCTCGTGCCCAATTTGCTGTGAGGATCTCGATTTGACGGACACGAGTTTCATGCCTTGTCTCTGTGGGTTTCGTCTTTGCCTCTTTTGCCACAAGAGGATTCTCGAGGAGGATGGGCGCTGCCCCGGTTGTAGGAAGCCCTATGAGTGTGAGCCTGTTGAGACAGAGGCCAGTGTGCTTGGAGACAGCCTCACTCTTCGGTTGGCACGTTCTTGCAGCATGATCGAGAGGTCCTGA 1014 0.5039 MVSDSIAAVPIPSAANTRNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKSKGYKDGLDDDGHAPPSPAEVKHSVEPLNTRRRGEEDDGLIHHDSDSESPTNCPAGVLCGTDSGTNFTGSSSGGSSSSSSSSSSSSGGCCSGNVTEVEEEEEGDDDDDDDDGCLDDWEAMADALAADDKRENPCPDSPPVVSPSEGSNLGSPNSKPESGRLFPWGSGNSRAWRADDAFRPQSLPNLSKQHSMPNPDRRGVPWGRAPTPSSCPICCEDLDLTDTSFMPCLCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVLGDSLTLRLARSCSMIERS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00885 337 MobiDBLite consensus disorder prediction 97 143 - -
Gma17g00885 337 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 335 - -
Gma17g00885 337 MobiDBLite consensus disorder prediction 146 168 - -
Gma17g00885 337 MobiDBLite consensus disorder prediction 1 217 - -
Gma17g00885 337 ProSiteProfiles Zinc finger RING-type profile. 262 304 IPR001841 -
Gma17g00885 337 Pfam RING/Ubox like zinc-binding domain 262 308 - -
Gma17g00885 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 319 IPR013083 -
Gma17g00885 337 CDD mRING-HC-C4C4_CNOT4 262 305 IPR039515 -
Gma17g00885 337 SUPERFAMILY RING/U-box 259 312 - -
Gma17g00885 337 MobiDBLite consensus disorder prediction 192 206 - -
Gma17g00885 337 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 16 335 IPR039780 GO:0004842|GO:0030014
Gma17g00885 337 MobiDBLite consensus disorder prediction 76 96 - -
Gma17g00885 337 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00885 Gma-Chr17 7497043 7498689 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00885 - - gmx:100796324 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00885 17 7497043 7498689 Gma17g00885 17 7497043 7498689 ECH
Gma17g00885 17 7497043 7498689 Gma05g00315 05 2915144 2918875 GST