Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00315 ATGGTTTCCGATTCAATCGCCGCCGTACCGATTCCCTCCGCCGCAAACACCAAGAACCCGGGGAAGAAGAAGAGGACTAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAGGTGCGGTGAAGAGCAAGGGGTGCAAGGACGGAGTGGACGATGACGGCCACGCACCGCCGCCGTCTCCAGCGGTGGTGAAACACTCGTTGGAGCCGCTGAACACGAGGCGCAGAGGCGAAGAGGACGATGGATTGATCCATCATGACAGCGATTCGGAGTCTCCGAGCAACTGCCCCGCGGGCGTGTTGTGCGGCACCGATTCGGGGACGAATTTCACCGGCAGCAGTAGCGGCGGCAGCAGTAGCAGCAGTTCCAGCAGCGGCGGGTGCTGTTCCGGGAACGTCACCGAGGAGGAGGAAGAAGAGGAAGGTGATGACGATGATGATGATGGATGCTTGGATGATTGGGAGGCTATGGCAGATGCTCTAGCCGCCGATGACAAGCGCGAAAACCCTTGTCCGGATTCGCCTCCAGTGGTTTCGCCTTCAGAGGGTTCCAATTTAGGGTCTCCGAATTCGAAACCCGAGAGTGATGGATTGGTTCCTTGGGGCTCTGGTAATAGCAGAGCGTGGAGGGCAGATGATGCCTTTCGCCCTCAGAGTTTGCCCAATTTGTCTAAGCAGCACAGTATGCCAAACCCTGATCGGCGTGGGGTGCCTTGGGGTCGCGCCCCCACGCCATCCTCGTGTCCAATTTGCTGTGAAGATCTCGATTTGACTGACACGAGTTTCATGCCTTGTCTCTGTGGGTTTCGGCTTTGCCTCTTTTGCCACAAGAGGATTCTCGAGGAGGATGGGCGTTGCCCTGGGTGTAGGAAGCCCTATGAGTGTGAACCTGTTGAGACAGAGGCCAGTGTGCTTGGAGGCAGCCTCACTCTTCGGTTGGCACGTTCGTGCAGCATGATCGAGAGAGTACTCTTGTTGGGTTTTCAAGTTACTGGTTTGGGGTTTTGTTGTAGTGTAAACAATGGAATCGATCACATGAAAGTGTGA 1074 0.5577 MVSDSIAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKSKGCKDGVDDDGHAPPPSPAVVKHSLEPLNTRRRGEEDDGLIHHDSDSESPSNCPAGVLCGTDSGTNFTGSSSGGSSSSSSSSGGCCSGNVTEEEEEEEGDDDDDDGCLDDWEAMADALAADDKRENPCPDSPPVVSPSEGSNLGSPNSKPESDGLVPWGSGNSRAWRADDAFRPQSLPNLSKQHSMPNPDRRGVPWGRAPTPSSCPICCEDLDLTDTSFMPCLCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVLGGSLTLRLARSCSMIERVLLLGFQVTGLGFCCSVNNGIDHMKV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00315 357 Pfam RING/Ubox like zinc-binding domain 257 303 - -
Gma05g00315 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 313 IPR013083 -
Gma05g00315 357 MobiDBLite consensus disorder prediction 142 163 - -
Gma05g00315 357 MobiDBLite consensus disorder prediction 98 140 - -
Gma05g00315 357 ProSiteProfiles Zinc finger RING-type profile. 257 299 IPR001841 -
Gma05g00315 357 SUPERFAMILY RING/U-box 254 307 - -
Gma05g00315 357 CDD mRING-HC-C4C4_CNOT4 257 300 IPR039515 -
Gma05g00315 357 MobiDBLite consensus disorder prediction 187 201 - -
Gma05g00315 357 MobiDBLite consensus disorder prediction 1 215 - -
Gma05g00315 357 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 16 330 IPR039780 GO:0004842|GO:0030014
Gma05g00315 357 MobiDBLite consensus disorder prediction 78 97 - -
Gma05g00315 357 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00315 Gma-Chr5 2915144 2918875 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00315 - - gmx:100792365 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00315 05 2915144 2918875 Gma05g00315 05 2915144 2918875 ECH
Gma17g00885 17 7497043 7498689 Gma05g00315 05 2915144 2918875 GST