Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00863 ATGGGAGATAACAAACGTAAGAGAGGACGCAAACCCAAAACCCCCGCCACCGAAACCCTAGACCACCCCGCCACCTCCCCAAGCTCCACCGCCATGGACGACGTCTTCTCTGTCGGCAACGTCGAGCTCATCGACACCACGGCCTCTCCCCACCACCGCCGCCTCCGCGGCCGCCCCAACAAGCCCCACGCTCTGCCCCCGGGGCGCCGCCACGCCCGCCCCCTCGACACCAACGGCGGCGGGGACTTCTCGGTCCCCGGCGACGTCGTCGGGGTGTCTCCCGCCGTGTCGACGGAGGCGGACCCGGCAGCGTGGGAGGCAAGGGTGCTGCCGGCGATGGACTCGGTGGTGAAGGTGTTCTGCGTACATACGGAACCCAATTTTTCGCTGCCGTGGCAGAGGAAGAGGCAATACAGCTCGAGCAGCAGCGGGTTTGTGATTGGCGGGAGAAGGGTTCTCACCAATGCGCATTCCGTGGAACACTACACGCAGGTCAAGCTCAAGAAACGTGGTTCTGATACCAAGTACTTGGCCACTGTGCTCGCCATTGGAACCGAATGTGATATTGCCATGCTTACAGTTGATGATGATGAGTTCTGGCAAGGGATGTCACCTGTAGAGTTTGGGGAATTGCCCACACTTCAAGACGCAGTTACAGTTGTGGGCTACCCAATTGGTGGAGACACTATCTCAGTGACCAGTGGTGTTGTATCGCGCATTGAGATTTTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGATTGATGCTGCTATAAACTCTGGCAATTCTGGTGGACCTGCATTTAATGACAAAGGAAACTGTGTGGGGATTGCATTTCAGTCCCTCAAGCATGAAGATGCGGAGAATATAGGTTATGTCATTCCAACGCCAGTTATCATGCATTTTATCCAGGATTATGAGAAGAATGGAGGATATACTGGATTCCCTATTCTTGGGGTTGAGTGGCAAAAAATGGAAAATCCTGATCTGCGAATGGCAACGGGCATGAAACCTGACCAGAAAGGTGTGCGTATTAGAAGAATTGATCCTACTGCTCCAGAATCTAAGGTTTTGAAGCCATCAGATGTTATTCTTAGTTTTGATGGGGTTGACATTGCCAATGATGGAACGGTTCCATTCCGTCATGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGAAATATACTGGGGATAATGCAGCAATCAAAGTACTGCGGAATTCAGACATTTTGAAATTTGACATCAAACTTGATAGTCACAGAAGGCTTATTCCAGCACACAGCAAGGGCAAGCCTCCCTCATATTATATTATTGCTGGATTTGTTTTTACAACTGTTTCGGTTCCATATCTTCGTTCTGAGTATGGAAAGGATTATGAATATGAAGCTCCAGTCAAGCTTTTGGATAAACTGCTGCATTCAATGCCACAATCACCGGATGAACAACTTGTCGTGGTCTCTCAGGTGCTGGTGGCTGATATCAACATTGGATATGAAGATTTTGTGAACACCCAGGTCCTTGCTTTCAATGGTCAACCAGTGAAAAACCTGAAGAGCTTAGCCACTATGGTAGAGAGCTGCAATGATGAATATCTAAAATTTGATCTAGATTATGATCAGATAGTGGTGCTTCGCACGAAGACTGCAAAAGCAGCTACTCTTGATATTCTTTCAACACACTGTATTCCATCGGCAATGTCTGATGATCTTAAGTCATGA 1731 0.4887 MGDNKRKRGRKPKTPATETLDHPATSPSSTAMDDVFSVGNVELIDTTASPHHRRLRGRPNKPHALPPGRRHARPLDTNGGGDFSVPGDVVGVSPAVSTEADPAAWEARVLPAMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWQGMSPVEFGELPTLQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDYEKNGGYTGFPILGVEWQKMENPDLRMATGMKPDQKGVRIRRIDPTAPESKVLKPSDVILSFDGVDIANDGTVPFRHGERIGFSYLISQKYTGDNAAIKVLRNSDILKFDIKLDSHRRLIPAHSKGKPPSYYIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLVADINIGYEDFVNTQVLAFNGQPVKNLKSLATMVESCNDEYLKFDLDYDQIVVLRTKTAKAATLDILSTHCIPSAMSDDLKS 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00863 576 PANTHER - 4 575 - -
Gma17g00863 576 Pfam PDZ domain 320 421 IPR001478 GO:0005515
Gma17g00863 576 Pfam PDZ domain 428 573 IPR041517 -
Gma17g00863 576 MobiDBLite consensus disorder prediction 53 68 - -
Gma17g00863 576 CDD PDZ_serine_protease 319 419 - -
Gma17g00863 576 MobiDBLite consensus disorder prediction 46 81 - -
Gma17g00863 576 Gene3D - 314 426 IPR036034 GO:0005515
Gma17g00863 576 Pfam Trypsin-like peptidase domain 143 280 - -
Gma17g00863 576 Gene3D - 200 311 IPR043504 -
Gma17g00863 576 MobiDBLite consensus disorder prediction 1 32 - -
Gma17g00863 576 Gene3D - 427 576 IPR046449 -
Gma17g00863 576 Gene3D - 94 199 IPR043504 -
Gma17g00863 576 PANTHER PROTEASE DO-LIKE 9 4 575 - -
Gma17g00863 576 PRINTS HtrA/DegQ protease family signature 144 156 IPR001940 GO:0004252|GO:0006508
Gma17g00863 576 PRINTS HtrA/DegQ protease family signature 172 192 IPR001940 GO:0004252|GO:0006508
Gma17g00863 576 PRINTS HtrA/DegQ protease family signature 214 238 IPR001940 GO:0004252|GO:0006508
Gma17g00863 576 PRINTS HtrA/DegQ protease family signature 251 268 IPR001940 GO:0004252|GO:0006508
Gma17g00863 576 PRINTS HtrA/DegQ protease family signature 360 372 IPR001940 GO:0004252|GO:0006508
Gma17g00863 576 SUPERFAMILY PDZ domain-like 344 426 IPR036034 GO:0005515
Gma17g00863 576 SUPERFAMILY Trypsin-like serine proteases 107 313 IPR009003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00863 Gma-Chr17 7314229 7319770 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00863 K25897 - gmx:100791040 1161.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00335 05 3124655 3129937 Gma17g00863 17 7314229 7319770 ECH
Gma17g00863 17 7314229 7319770 Gma17g00863 17 7314229 7319770 ECH
Gma17g00863 17 7314229 7319770 Gma05g00335 05 3124655 3129937 GST