Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00335 ATGGGAGATAACAAACGTAAGAGAGGACGCAAAGCCAAAACCCCCGCCTCCGAAACCCTAGACCACCCCGCCCCCGTCACCACCACCGCTCCAAATTCCACCTCCACCGCCATGGACGATGTCTTCTCCGTCGGCAACGTCGAGCTCATCGACACCACGGCCTCTCCGCACCACCGCCGCCTCCGCGCCCGTCCCAACCACTCCGAGAAGCCCCACGCTCTGCCCACGGGGCGCCGCCACGCCCGCCCCCTCGACAACGGAGGCGGTGACTTCTCGGTCCCCAGCGACGTCGTCGGGGTTTCCCCTGCCGTGGCGATGGAGGCGGACCCGGCGGCGTGGGTGGCAAGGGCGCTGCCGGCGATGGACTCGGTGGTGAAGGTGTTCTGCGTCCACACGGAGCCTAATTTCTCGCTGCCGTGGCAGAGGAAGAGGCAATACAGCTCGAGCAGCAGCGGGTTTGTGATTGGCGGGAGAAGGGTTCTCACCAATGCGCATTCGGTAGAACACTATACACAGGTCAAGCTCAAGAAACGTGGCTCTGATACCAAGTACTTGGCCACTGTGCTCGCCATTGGAACCGAATGTGACATTGCCATGCTTACAGTTGATGATGATGAGTTCTGGCAAGGGATGTCACCTGTAGAGTTTGGGGAATTGCCCACACTTCAAGACGCAGTTACAGTTGTGGGCTACCCAATTGGTGGAGACACTATCTCCGTCACCAGTGGTGTTGTATCACGCATTGAGATTCTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGATAGATGCTGCTATAAATTCTGGCAATTCTGGTGGACCTGCATTTAATGACAAAGGAAACTGTGTGGGGATTGCATTTCAGTCCCTCAAGCATGAAGATGCGGAGAATATAGGTTATGTCATTCCAACGCCAGTTATCATGCATTTTATCCAGGATTATGAGAAGAATGGAGGATATACTGGATTCCCTATTCTTGGGGTTGAGTGGCAGAAAATGGAAAATCCTGATCTGCGAATGGCCATGGGCATGAAACCTGATCAGAAAGGTGTGCGCATTAGAAGAATTGATCCTACTGCTCCAGAATCCAAGGTTTTGAAGCCATCAGATGTTATCCTTAGTTTTGATGGGGTTGATATTGCCAATGATGGAACAGTTCCATTTCGCCACGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGAAATATACTGGGGATAATGCAGCAATCAAAGTACTGCGGAATTCAGACATTTTCAAATTTGACATTAAACTTGATAGTCACAGAAGGCTTATTCCAGCACACAGCAAGGGCAAACCTCCCTCATATTATATTATTGCTGGATTTGTTTTTACAACTGTTTCTGTTCCATATCTTCGTTCCGAGTATGGAAAGGATTATGAATATGAAGCTCCAGTCAAGCTTTTGGATAAACTGCTGCATTCGATGCCACAATCACCGGATGAACAACTTGTTGTGGTCTCTCAGGTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAGGTCCTTGCTTTCAATGGTCAACCAGTGAAAAACCTGAAGAGCCTAGCCACTATGGTAGAGAGCTGCAATGATGAATATCTAAAATTTGATCTAGATTATGATCAGATCGTGGTGCTTCGCATGAAGACTGCAAAAGCAGCTACTCTTGATATTCTTGCAACGCACTGTATTCCATCAGCAATGTCTGATGATCTTAAGTCATGA 1755 0.49 MGDNKRKRGRKAKTPASETLDHPAPVTTTAPNSTSTAMDDVFSVGNVELIDTTASPHHRRLRARPNHSEKPHALPTGRRHARPLDNGGGDFSVPSDVVGVSPAVAMEADPAAWVARALPAMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWQGMSPVEFGELPTLQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDAENIGYVIPTPVIMHFIQDYEKNGGYTGFPILGVEWQKMENPDLRMAMGMKPDQKGVRIRRIDPTAPESKVLKPSDVILSFDGVDIANDGTVPFRHGERIGFSYLISQKYTGDNAAIKVLRNSDIFKFDIKLDSHRRLIPAHSKGKPPSYYIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLVADINIGYEDIVNTQVLAFNGQPVKNLKSLATMVESCNDEYLKFDLDYDQIVVLRMKTAKAATLDILATHCIPSAMSDDLKS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00335 584 MobiDBLite consensus disorder prediction 67 85 - -
Gma05g00335 584 Pfam PDZ domain 436 581 IPR041517 -
Gma05g00335 584 Gene3D - 103 207 IPR043504 -
Gma05g00335 584 MobiDBLite consensus disorder prediction 1 38 - -
Gma05g00335 584 CDD PDZ_serine_protease 327 427 - -
Gma05g00335 584 Gene3D - 435 584 IPR046449 -
Gma05g00335 584 SUPERFAMILY Trypsin-like serine proteases 117 321 IPR009003 -
Gma05g00335 584 SUPERFAMILY PDZ domain-like 352 434 IPR036034 GO:0005515
Gma05g00335 584 MobiDBLite consensus disorder prediction 21 38 - -
Gma05g00335 584 MobiDBLite consensus disorder prediction 51 90 - -
Gma05g00335 584 PRINTS HtrA/DegQ protease family signature 152 164 IPR001940 GO:0004252|GO:0006508
Gma05g00335 584 PRINTS HtrA/DegQ protease family signature 180 200 IPR001940 GO:0004252|GO:0006508
Gma05g00335 584 PRINTS HtrA/DegQ protease family signature 222 246 IPR001940 GO:0004252|GO:0006508
Gma05g00335 584 PRINTS HtrA/DegQ protease family signature 259 276 IPR001940 GO:0004252|GO:0006508
Gma05g00335 584 PRINTS HtrA/DegQ protease family signature 368 380 IPR001940 GO:0004252|GO:0006508
Gma05g00335 584 Gene3D - 208 319 IPR043504 -
Gma05g00335 584 Pfam Trypsin-like peptidase domain 151 288 - -
Gma05g00335 584 Pfam PDZ domain 329 429 IPR001478 GO:0005515
Gma05g00335 584 Gene3D - 322 434 IPR036034 GO:0005515
Gma05g00335 584 PANTHER PROTEASE DO-LIKE 9 4 583 - -
Gma05g00335 584 PANTHER - 4 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00335 Gma-Chr5 3124655 3129937 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00335 K25897 - gmx:100817187 1174.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00335 05 3124655 3129937 Gma17g00863 17 7314229 7319770 ECH
Gma05g00335 05 3124655 3129937 Gma05g00335 05 3124655 3129937 ECH
Gma17g00863 17 7314229 7319770 Gma05g00335 05 3124655 3129937 GST