Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00861 ATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACTGATGATGAGTGATTATGCAGTGGAGACTATAAATGATGGACTCAATGAGTTCAATGTGGAGTTTCATGGTCCAAAAGAAAGCCTTTATGAAGGTGGAGTCTGGAAAATTCGTGTTGAGCTTCCTGATGCTTACCCGTACAAATCCCCTTCTATTGGCTTTGTGAACAAAATATTCCACCCAAATGTTGATGAGCTATCTGGCTCTGTATGCTTGGATGTCATTAACCAATCTTGGAGTCCAATGTTTGATCTTCTAAATGTTTTTGAAGTTTTTCTTCCCCAACTCTTGCTTTATCCAAATGCTTCAGATCCTCTCAATGGTGATGCAGCATCGTTAATGATGAAGGATAAAAAGCTATATGACCAGAAAGTTAAAGAGTATTGTGAGCGGTATGCTAAGAAGGAAAACATTAGCAACTCTACAGCTGAAGAGAGTGGAGATGAGGAAGACATCAGTGAAGAAGAAAGTGGATCTAGTGATGATGAAATTCCTGGTCGCGCTGATCCTTAA 555 0.3946 MSSPSKRREMDVMKLMMSDYAVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDKKLYDQKVKEYCERYAKKENISNSTAEESGDEEDISEEESGSSDDEIPGRADP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00861 184 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Gma17g00861 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 184 - -
Gma17g00861 184 SMART ubc_7 4 148 - -
Gma17g00861 184 Pfam Ubiquitin-conjugating enzyme 12 142 IPR000608 -
Gma17g00861 184 SUPERFAMILY UBC-like 4 150 IPR016135 -
Gma17g00861 184 CDD UBCc 7 143 IPR000608 -
Gma17g00861 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Gma17g00861 184 MobiDBLite consensus disorder prediction 157 173 - -
Gma17g00861 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Gma17g00861 184 MobiDBLite consensus disorder prediction 150 184 - -
Gma17g00861 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00861 Gma-Chr17 7293603 7300504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00861 4 117 Miscellaneous Gene Families AT3G17000 23.770 2.52e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00861 K10576 - gmx:100790685 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00861 17 7293603 7300504 Gma17g00861 17 7293603 7300504 ECH
Gma17g00861 17 7293603 7300504 Gma05g00339 05 3152353 3156908 GST