Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00339 ATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACTGATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTTCAATGTGGAGTTTCATGGTCCAAAAGAAAGCCTTTATGAAGGTGGAGTCTGGAAAATTCGGGTTGAGCTTCCTGATGCTTACCCATACAAATCCCCTTCTATTGGCTTCGTGAACAAAATTTTCCACCCAAATGTTGATGAGCTATCTGGCTCTGTATGCTTGGATGTCATTAACCAATCTTGGAGTCCAATGTTCGATCTTCTAAATGTCTTTGAAGCTTTTCTTCCCCAACTCTTGCTTTATCCAAATGCTTCAGATCCTCTCAATGGTGATGCAGCATCGTTAATGATGAAGGATAAAGAGCTGTATGACCAGAAAGTTAAAGAGTATTGTGAGCGGTATGCTAAGAAGGAAAACATTTGCAACTCTACGGCTGGTGAGGAGAGCGGAGATGAGGAAGACATCAGTGAAGAAGAAAGTGCATCTAGTGATGATGAAATTCCTGGTCGCGCTGATCCTTAA 558 0.4122 MSSPSKRREMDVMKLMMSDYTVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEAFLPQLLLYPNASDPLNGDAASLMMKDKELYDQKVKEYCERYAKKENICNSTAGEESGDEEDISEEESASSDDEIPGRADP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00339 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 185 - -
Gma05g00339 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 185 - -
Gma05g00339 185 SUPERFAMILY UBC-like 4 149 IPR016135 -
Gma05g00339 185 CDD UBCc 7 143 IPR000608 -
Gma05g00339 185 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Gma05g00339 185 Gene3D Ubiquitin Conjugating Enzyme 1 160 IPR016135 -
Gma05g00339 185 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Gma05g00339 185 SMART ubc_7 4 148 - -
Gma05g00339 185 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Gma05g00339 185 MobiDBLite consensus disorder prediction 153 185 - -
Gma05g00339 185 MobiDBLite consensus disorder prediction 159 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00339 Gma-Chr5 3152353 3156908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00339 4 117 Miscellaneous Gene Families AT3G17000 24.590 6.76e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00339 K10576 - gmx:100527526 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00339 05 3152353 3156908 Gma05g00339 05 3152353 3156908 ECH
Gma17g00861 17 7293603 7300504 Gma05g00339 05 3152353 3156908 GST