Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00859 ATGGGGACGACAACGACACCCCTTTCCCACACGGTTCGCGTGTCCAACATCCCCCAATCCGCGACCGCGAAGGACCTCCTCGACTTCCTCGAATCGACGTTGGGTTCCTCCACGGTGTTCGCCCTCGAAATCTTCTCCGACAACCCCAACTGGAAGTCCCGCGGCTTCGGGCGCGTCCAGTTCGAGACCCTCGACGCCAGGTCCCGCGCCCTCTCGCTCTCCCAACTCAACCAGCTCCTCTTCAACCGCCACTTCCTCCGCCTCTCCGAAACCGACTCCGACATCATCTTCCGCCCCCAACACCGCCTCCAAAACGGCGTCCTCTACGCCGGCTTCATGCTATCCGACCACCGCATGAGCGTCCTCGAATCGTGGGAGGGCATTGCGGGGTGGGTCCTGCCCCAAAGGAAGAGACTTGACTTCTGGGTGTGGCATAATGGTGACTGTTACAGACTCGAGTTTTTGTTTGAGGATATTTTGGAGTCTCATGGCTATTGTTTGGGAGAAGATGCCAGACTCAATGCCCTTCTCTTGAAGATGAAATTTGGGCCAAGGATTTATAAGAAAAAGACAGGGACAGATGTGGCAGCCAATTTTAGGGGTGATAGATACCGTTTTCTGAAGGAGGATTTTGAATTTCTTTGGGTGCGGACTACTGACTTCTCGCCTCTCAAGTCAATTGGGCACTCTACTTCGTTTTGTTGGGAAATTGTGGAGGAACATTTAGCTTCGGATGTTTTTACAAGTTTCCCACTCTACAAGGAAAATTTGAGAGATCTGGCTCTGGAAGACAGAGAAGAACTCTGTTCTTTGACAGAAGCAGTTCCGCTTGTAAAACATGCTACGCAATCCAAGTTACCTTATGAGGCTGTTTTCCAGCTGAATTCTCTTGTTCATACCCAGAAAATAAGTCTTGCTTCGGTGGATGATGAATTGATTGACTTGTTAGCAGACTTAGATGAAGAAACTAGAGCTGTGGTTTTTCAGAAATTGCACAAGATGAGCTTCACTTGTTATGAGCCTCTCAAATTTGTCAAGACTCAATTGCATGTGCTGAGTAACAAGAAAAAAGGTCTGCTGCAATCGCCGCAGAATAGGCTGACAGATAGTAATATTATGAGCTGTCATAGAGCCTTGATTACCCCGACAAAGATTTATTGCCTTGGTCCCGAGCTTGAAACCTCAAATCATGTGGTAAAGCACTTTGCTTCACTTGCATCAGACTTCATGAGGATTACCTTTGTTGAAGAGAATTGGAATAAGCTTCCAACTAATGCAGTATCAACTGGTGTGCAAAAGGGAATCTTTTCAAAGCCTTTGAAAACTGAAATATATAAGCGGATATTGACTATTCTTCGAGATGGGATCGTAATTGGCTCAAAGAGATTTGAGTTCCTGGCCTTCTCTGCTAGTCAGCTGCGATCAAATTCTGTTTGGTTATTTGCTTCTAATGACAATCTGAAAGCAGCAGATATCAGAGAATGGATGGGATGCTTCAACAATATTCGCAGTGTTTCTAAATGTGCAGCGAGGATGGGTCAGTTGTTCAGTTCTTCCATGCAAACTTTTGAAGTGGCCTCTGAAGATGTGGAGATGATTCCAGATATTGAAGTTACTTCTGATGGTGTAAGCTACTGTTTCTCAGATGGTATTGGAAAAATTTCCCAATGTTTTGCTAGGCAAGTTGCTCAAAAGCTAAACTTGGATCATACTCCATCAGCATTTCAAATTCGGTATGGAGGATTTAAAGGTGTCATTGCCATTGATCGCCATTCCTTTAGGAAGTTATCATTGCGTAGCAGCATGCTTAAGTTTGAATCCAATAATAGGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGTTGACTACGTTAGGAGTAAAAGATGAGGTACTTTTGGCAATGCAACAGGACCAATTGGATTTGTTAGGAAGGATGTTGACTGATAGTAAAGCAGCTTTGGATGTTTTGGAAAGTTTAAACGGAGCTGATTCAAAGAGCATTCTAGTGAAGATGTTGCATGAATTTAATGAGCCAAACAGTGAGCCTTACCTATCGATGATGCTTAAGGCTTATTATGCATACCAATTATCTGACTTGAAAAGTAGATGCCGAATATTTGTTCCCAAGGGTCGGGTCTTGGTAGGTTGCTTGGATGAAACTGGTCTTTTGAATTATGGCCAAGTATTTGTCCGCATAACCGTGGCAAAAACTAGGGAAAATTTTGGAGATGAAAACCTAAGGAAAGTGGATGGGGATGATAGCACACGTATAATAGTGGGAAAGGTGGTGGTCACAAAAAATCCTTGTCTTCACCCAGGAGACATCAGAGTCCTTGATGCTATCTACAGTAAAGAATTAGAGGAAAACGGTTTGAGGGATTGCCTTGTATTTCCACAAAAAGGACATAGGCCTCATCCAAATGAATGCTCTGGAGGTGATCTTGATGGAGATTTGTTTTTCTTAAGTTGGGACAAAGATCTAATCCCATGTCAAACTGAGGCTCCAATGGACTATACAGGAAGGAGGCCTCGTATAATGGACCATAAGGTGACCCTAGAGGAAATCCAACAATTCTTTGTTGATTACATGATCAATGATACTTTGGGTGCTATCTCTACTGCACATCTCGTTCATGCTGACCGTGAACAAGATAAGGCCAAGAGTAGAAAATGTCTGGAATTGGCAGAGCTTCATTCCATGGCTGTTGACTTTGCAAAGACTGGAGCACCTGCTGCAATGCCTAGAGTTCTGAAACCAAGAGAGTTTCCAGATTTCATGGAGAGAGTTGACAAGCCTATGTACATCTCCAAGGGGGTACTGGGAAAACTTTATCATGCCATAATTGAGTCACAAATGCAAATAAGATATAGCTTTGTGTGGTCAGAGAAGCATGCTGAAGAAGCATATGATCGTAGCCTTGAAGTGAATGGTTTTGAGGCCTTCCTTGAGACAGCATCAACTCACAAAGAAATGTATGCAGAGAAGATGAGCAGTTTAATGGACTTTTATGGTGCAGAGACCGAGGATGAAATGCTACTTGGTAACGTGCAAAACCGTGCTTCATATTTGCAGCGTGATAACAGGAGATATGGTGATATGAAGGATCGGATTCTGCTCTCAGTGAAGAATCTTCAGCGTGAAGCTAAAGAATGGTTTGAAACTAGTTGCCAACCGCGTGAATATAAGCCTATGGCATCTGCATGGTATCATGTGACCTATCACCGCAGCCATTATTGCCAGGAAAGCCCATGTTTTCTAAGCTTTCCATGGATAGTTGGTGACATTTTGCTGCAAATAAGGTCTGTGAACTCCTTTGTTAACAGATGA 3363 0.4383 MGTTTTPLSHTVRVSNIPQSATAKDLLDFLESTLGSSTVFALEIFSDNPNWKSRGFGRVQFETLDARSRALSLSQLNQLLFNRHFLRLSETDSDIIFRPQHRLQNGVLYAGFMLSDHRMSVLESWEGIAGWVLPQRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDARLNALLLKMKFGPRIYKKKTGTDVAANFRGDRYRFLKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLASDVFTSFPLYKENLRDLALEDREELCSLTEAVPLVKHATQSKLPYEAVFQLNSLVHTQKISLASVDDELIDLLADLDEETRAVVFQKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLLQSPQNRLTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASLASDFMRITFVEENWNKLPTNAVSTGVQKGIFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVASEDVEMIPDIEVTSDGVSYCFSDGIGKISQCFARQVAQKLNLDHTPSAFQIRYGGFKGVIAIDRHSFRKLSLRSSMLKFESNNRMLCVTKWSESMPCFLNREIISLLTTLGVKDEVLLAMQQDQLDLLGRMLTDSKAALDVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVAKTRENFGDENLRKVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAIYSKELEENGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFLSWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYHAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNVQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCQPREYKPMASAWYHVTYHRSHYCQESPCFLSFPWIVGDILLQIRSVNSFVNR 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00859 1120 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 1116 IPR007855 GO:0003968
Gma17g00859 1120 SUPERFAMILY RNA-binding domain, RBD 6 94 IPR035979 GO:0003676
Gma17g00859 1120 Gene3D - 3 96 IPR012677 -
Gma17g00859 1120 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 6 1116 - -
Gma17g00859 1120 CDD RRM_SF 12 70 - -
Gma17g00859 1120 SMART rrm1_1 11 89 IPR000504 GO:0003723
Gma17g00859 1120 Pfam RNA dependent RNA polymerase 380 959 IPR007855 GO:0003968
Gma17g00859 1120 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 93 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00859 Gma-Chr17 7279943 7284926 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00859 K11699 - gmx:100789458 2217.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00859 17 7279943 7284926 Gma17g00859 17 7279943 7284926 ECH
Gma17g00859 17 7279943 7284926 Gma05g00341 05 3174298 3179873 GST