Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00341 ATGGGGACGACAACGACGACAACCCTTTCCAACACGGTTCGCGTGTCCAACATCCCCCAATCCGCGACCGCGAAGGACCTCCTCGACTTCCTCGAATCGACGGTGGGTCCCTCGACGGTGTTCGCCCTCGAAATCTTCTCCGACAACCCCAACTGGAAGTCCCGCGGCTTCGGCCGCGTCCAGTTCGAGACCCTCGACGCCAGGTCCCGCGCCCTCTCGCTCTCCCAACTCAACCACCTCCTCTTCCACCGCCACTTCCTCCGCCTCTCCGAAACCGACGCCGACATCATCTTCCGCCCCCAACACCGCCTTCATAACGGCGTCCTCTACGCCGGCTTCGTGCTCTCCGACCACCGCATGAGCGTCCTCGAATCCTGGGAGGGCGTCGCGGGCTGGGTCCTGCCCCTAAGGAAGAGGCTGGACTTCTGGGTGTGGCATAATGGCGACTGTTACAGACTCGAGTTTTTGTTTGAGGATATTTTGGAGTCTCATGGCTATTGTTTGGGAGAAGATGCCAAACTCAATGCCCTCCTCTTGAAGATGAAATTTGGGCCAAGGATTTATAAGAAAAAGACGGGGGCAGATGTGGCAGCCAAGTTTAGGGGAGATAGATACCGTTTTTGTAAGGAGGATTTTGAATTTCTTTGGGTGCGGACTACCGACTTCTCACCTCTCAAGTCAATTGGGCACTCTACTTCGTTTTGTTGGGAAATTGTGGAAGAACATTTAGCTTTGGATGTTTTTAAAAGTTTCCCACTCTACAAGGAAAATTTGAGAGATCTGGCTCTGGAAGACGGAGAAGAATTCTGTTCTTCGACAGAAGCAGTTCCGCTTGTAAAGCGTGCTTCACAATCCAAGTTACCTTATGAGGCTCTTTTCCAGCTGAATTCTCTTGTTCATACCCAGAAAATTAGTCTTGCTTCGGTGGATGATGAATTGATTGACTTGTTAGCAGGCTTAGATGAAGAAACTAGAGCTGTGATTTTTCTGAAATTGCACAAGATGAGCTTCACCTGTTATGAGCCTCTCAAATTTGTCAAGACTCAATTGCATGTGCTGAGTAACAAGAAAAAAGGTCTGCCACAATCGTCGCAGAAAAGGTTGACAGATAGTAACATTATGAGCTGTCATAGAGCCTTGATTACCCCCACAAAGATTTATTGCCTTGGTCCTGAGCTTGAAACCTCAAATCATGTGGTAAAGCACTTTGCTTCGCATGCATCGGACTTCATGAGGATTACCTTTGTCGAAGAGAATTGGAATAAGCTTCCAACTAATGCAGTATCAACTGGTGTGCAAAAGGGACTCTTTTCAAAGCCTTTGAAAACTGAAATATATAAGCGGATATTGACTATTCTCCGAGATGGGATTGTAATTGGCTCAAAGAGATTTGAGTTCCTGGCCTTCTCTGCTAGTCAGCTGCGATCAAATTCTGTTTGGTTGTTTGCTTCTAATGACAATCTGAAAGCAGCAGATATCAGAGAATGGATGGGATGCTTCAACAATATTCGCAGTGTTTCTAAATGTGCAGCGAGGATGGGTCAGTTGTTCAGTTCTTCCATGCAAACTTTTGAAGTGGTCTCTCAAGATGTGGAGATAATTCCGGATGTTGAAGTTATTTCTGATGGTGTAAGCTATTGTTTCTCAGATGGTATTGGAAAAATTTCCCAATCTTTTGCTAGGCAAGTTGCTCAAAAGCTAAAATTGGATCATACTCCATCAGCATTTCAAATTCGGTATGGAGGATTTAAAGGTGTCATTGCTGTTGATCGCCGTTCCTTTAGGAAGTTATCATTGCGTAGCAGCATGCTTAAGTTTGAATCCAAAAACAGCATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGTTGTCTACATTAGGAGTAAAAGATGAGGTGCTTTTGGCAATGCAACATGACCAATTGGATTTGTTAGGAAGGATGCTGACTGATAGTAAAGCAGCTTTGGAAGTTTTGGAAAGTTTAAATGGAGCTGATTCAAAGAGCATTCTAGTGAAGATGTTGCATGAATTTAATGAGCCAAACAGTGAGCCTTACCTATCAATGATGCTCAAGGCTTATTATGCATACCAATTATCTGACTTGAAAAGTAGATGCCGAATATTTGTTCCCAAGGGTCGGGTCTTGGTAGGTTGCTTGGATGAAACTGGTCTTTTGAATTATGGCCAAGTATTTGTCCGCATAACCGTGACAAAAACTAGGGAAAAATTTGGAGATGAAAACCTAAGGAAAGTGGATGGGGATGATAACACATGTATAATAGTGGGAAAGGTGGTGGTCACCAAAAATCCTTGCCTTCACCCAGGAGACATCAGAGTCCTTGATGCTATCTACAGTGAAGAATTAGAGGAGAAGGGTTTGAGGGATTGCCTTGTATTTCCACAAAAAGGACATAGGCCTCATCCAAATGAATGCTCTGGAGGTGATCTCGATGGAGATTTGTTTTTCATAAGTTGGGACAAAGATCTAATCCCATGTCAAACTGAGGCTCCAATGGACTACACAGGAAGGAGGCCCCGTATAATGGACCATAAAGTGACCCTAGAGGAAATCCAACAATTCTTTGTTGATTACATGATCAATGATACTTTGGGTGCTATCTCTACTGCTCATCTAGTTCACGCTGACCGTGAACAAGATAAGGCCAAGAGTAGAAAATGTCTGGAATTGGCAGAGCTTCATTCCATGGCTGTCGACTTTGCAAAGACTGGAGCACCTGCTGCAATGCCTAGAGTTCTGAAACCAAGAGAGTTTCCAGATTTCATGGAGAGGGTTGACAAGCCTATGTACATCTCCAAGGGGGTACTGGGAAAACTTTATCGCGCCATAATTGAGTCACAAATGCAAATAAGATATAGCTTTGTGTGGTCAGAGAAGCATGCTGAAGAAGCATATGACCGTAGCCTTGAAGTGAATGGTTTTGAGGCCTTCCTTGAGACAGCATCAACTCACAAAGAAATGTATGCAGAGAAGATGAGCAGTTTAATGGACTTCTATGGTGCAGAGACCGAGGATGAAATGCTACTTGGTAACTTGCAAAACCGTGCTTCATATTTGCAGCGTGATAACAGGAGATATGGTGATATGAAGGATCGGATTCTGCTCTCAGTGAAGAACCTTCAGCGTGAAGCTAAAGAATGGTTTGAAACTAGTTGCGAACCGCATGAATATAAGCCTATGGCATCTGCATGGTATCATGTGACCTATCACCCCAGCTATTATTGCCGGGAAAGCCCATGCTTTCTAAGCTTTCCATGGATAGTTGGTGAGATTTTGCTGCAAATAAGGTCTGTGAGCAAAGGAGTTCACAAATGA 3366 0.4447 MGTTTTTTLSNTVRVSNIPQSATAKDLLDFLESTVGPSTVFALEIFSDNPNWKSRGFGRVQFETLDARSRALSLSQLNHLLFHRHFLRLSETDADIIFRPQHRLHNGVLYAGFVLSDHRMSVLESWEGVAGWVLPLRKRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDAKLNALLLKMKFGPRIYKKKTGADVAAKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLALDVFKSFPLYKENLRDLALEDGEEFCSSTEAVPLVKRASQSKLPYEALFQLNSLVHTQKISLASVDDELIDLLAGLDEETRAVIFLKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLPQSSQKRLTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASHASDFMRITFVEENWNKLPTNAVSTGVQKGLFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVVSQDVEIIPDVEVISDGVSYCFSDGIGKISQSFARQVAQKLKLDHTPSAFQIRYGGFKGVIAVDRRSFRKLSLRSSMLKFESKNSMLCVTKWSESMPCFLNREIISLLSTLGVKDEVLLAMQHDQLDLLGRMLTDSKAALEVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVTKTREKFGDENLRKVDGDDNTCIIVGKVVVTKNPCLHPGDIRVLDAIYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYRAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCEPHEYKPMASAWYHVTYHPSYYCRESPCFLSFPWIVGEILLQIRSVSKGVHK 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00341 1121 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 94 IPR000504 GO:0003723
Gma05g00341 1121 SMART rrm1_1 12 90 IPR000504 GO:0003723
Gma05g00341 1121 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 1117 IPR007855 GO:0003968
Gma05g00341 1121 SUPERFAMILY RNA-binding domain, RBD 8 92 IPR035979 GO:0003676
Gma05g00341 1121 Pfam RNA dependent RNA polymerase 381 960 IPR007855 GO:0003968
Gma05g00341 1121 Gene3D - 3 96 IPR012677 -
Gma05g00341 1121 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 73 IPR000504 GO:0003723
Gma05g00341 1121 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 6 1117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00341 Gma-Chr5 3174298 3179873 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00341 K11699 - gmx:100808274 2231.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00341 05 3174298 3179873 Gma05g00341 05 3174298 3179873 ECH
Gma17g00859 17 7279943 7284926 Gma05g00341 05 3174298 3179873 GST