Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00854 ATGGCCAAAGAGACTAGTGTTGTTTCTCAATATCCCAGCAAATTACAAGTGCAGGGTGAAAATTTTGATCATCAAAACCTTGTAATATCAGCAGCTGATAATGGAAGGAAGGAGAGTAATGGAGCATCTAAAGACACATCTCTTGCACTTCCTGGGTGGTACGCTGATGTATCCTGGCCGGGAGAAGCACACATATATAAAATGGAAAAGATCATATTCCAAGGGAAATCAGAATTCCAAGAGCTTCTTGTATTTGAGTCATCTAGACATGGCAAGGTTGCAATTCTTGATGGGTGTATCCAGCTGACAGAGAATGATGAATTTGCTTACCAAGAGATGCTCACTCACCTTGCACTCTGTTCAATTCCAAATCCAAAGAAGGTGCTGCTTGTTGGAGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGCCATTCTTCTGTTGAGCATATTGATATATGCGAAATAGACAAAATGGTCATTGATGCTTATAAGAAGTTTTTCCCAGATATAGCTGTTGGTTACGAGGATCCCCGAGTGCATGTTCATATCAGAGATGGAATTGCGTTCACCAATTCTGTTCCTGAGGGCACTTATGATGTCATTATAGTGGATGCTTTTCAACCAATGGGACCTATTGCGGAAGTTCTTGCAGATAACTGCTTCTTAGAATCAGTAGCAAAGGCTCTTCGACCCGGTGGAGTGTTGTCTGCTCCAGCAGACAGCTTGTGGCATAAGAACTTTGTGGTTGCAGACACCATAGCAAATTGCAAGAAGATATTCAAAGGCTCCGTTAACTATGCTTGGACCACAGTTCCTACATATGCAAGGCATTTCTTATCTAACTATATTGGGGTGATTGGATTCATGCTCTGCTCTACGGAGGGTCCCCCAGTGAACTTCAAACATCCAATAAATAAATTGAATCCAGAGAAAAATGGGGTGGCAAAGGGACCTCCTAAGTTTTATAACCCAGAGATCCATGCTGCTGCATTCTGTCTGCCTTCTTTTGTGGACAAGGTTGTTGATCCAATAAGATATTGA 1044 0.4215 MAKETSVVSQYPSKLQVQGENFDHQNLVISAADNGRKESNGASKDTSLALPGWYADVSWPGEAHIYKMEKIIFQGKSEFQELLVFESSRHGKVAILDGCIQLTENDEFAYQEMLTHLALCSIPNPKKVLLVGGGDGGILREISRHSSVEHIDICEIDKMVIDAYKKFFPDIAVGYEDPRVHVHIRDGIAFTNSVPEGTYDVIIVDAFQPMGPIAEVLADNCFLESVAKALRPGGVLSAPADSLWHKNFVVADTIANCKKIFKGSVNYAWTTVPTYARHFLSNYIGVIGFMLCSTEGPPVNFKHPINKLNPEKNGVAKGPPKFYNPEIHAAAFCLPSFVDKVVDPIRY 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00854 347 Gene3D Spermidine synthase, tetramerisation domain 52 101 IPR037163 -
Gma17g00854 347 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 51 294 IPR030374 -
Gma17g00854 347 CDD AdoMet_MTases 149 236 - -
Gma17g00854 347 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 343 IPR001045 GO:0003824
Gma17g00854 347 Pfam Spermine/spermidine synthase domain 107 297 - -
Gma17g00854 347 Hamap Polyamine aminopropyltransferase [speE]. 52 343 IPR001045 GO:0003824
Gma17g00854 347 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 52 342 IPR029063 -
Gma17g00854 347 PANTHER SYNTHASE 1, PUTATIVE-RELATED 1 343 - -
Gma17g00854 347 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 128 141 IPR030373 -
Gma17g00854 347 Gene3D Vaccinia Virus protein VP39 102 344 IPR029063 -
Gma17g00854 347 TIGRFAM speE: spermidine synthase 53 337 IPR001045 GO:0003824
Gma17g00854 347 Pfam Spermidine synthase tetramerisation domain 52 104 IPR035246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00854 Gma-Chr17 7261048 7264010 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00854 K00797 - gmx:100788406 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00345 05 3201376 3204082 Gma17g00854 17 7261048 7264010 ECH
Gma17g00854 17 7261048 7264010 Gma17g00854 17 7261048 7264010 ECH
Gma17g00854 17 7261048 7264010 Gma05g00345 05 3201376 3204082 GST