Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00345 ATGGCCAAAGAGATCAGTGTTGTTTCTCAATATCCCAGCAAATTACAAGTGCAGGGTGAGAATTTTGATCCTAAAAACCTTGTAATGACAACAGCAGCTGATAATGGAAAGAAGGAGAGTAATGGAGCACCTAAAGACACATATCCTGCGTTTCCCGGGTGGTATGCTGATGTTTCCTGGCCAGGAGAAGCACACATATATAAAATGGAAAAGATCATATTCCAAGGGAAATCAGAATTCCAAGAGCTTCTTGTATTTGAGTCATCTAGACATGGCAAGGTTGCAATTCTGGATGGGTATATCCAGCTGACAGAAAATGATGAATTTGCTTACCAAGAGATGCTCACTCACCTTGCACTTTGTTCCATTCCAAATCCAAAGAAGGTTCTGCTTGTTGGAGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGCCACTCTTCTGTTGAGCATATTGATATATGTGAAATAGACAAAATGGTCATTCATGTTTATAAGAAGTTTTTCCCAGATATAGCTGTTGGTTACGAGGATCCCCGAGTGCATGTTCATATCAGAGATGGAATTGCGTTCATCAATTCTGTTCCTGAGGGCACTTACGATGTCATTATATTGGATGCTTTTCAACCAATGGGACCTATTGCGGAAGTTCTTGCTGATAAATGCTTCTTAGAATCAGTAGCAAAGGCTCTTCGACCCGGTGGAGTGTTGTCTGCTCCAGCAGACAGCTTGTGGCTTAAGAACTTTGTAGTTGCAGATACCATAGCAAATTGCAAGAAGATATTCAAAGGCTCCGTTAACTATGCCTGGACCACAAAATTTTTGGTAAGAAGTGTTTATTTGTTTTTGTTTACCAGTGGGGTGATTGGATTCATGCTTTGCTCCACGGAGGGTCCCCCAGTGAACTTCAAACATCCAACAAATAAATTGAATCCAGAGCAAAATGGGGTAGCAAAGGGACCTCCTAAGTTTTATAACCCAGAGATCCATGCTGCTGCATTCTGTCTGCCTTCTTTTGTGGACAAGGTTGTTGATCTAAAAAGATATTGA 1050 0.4133 MAKEISVVSQYPSKLQVQGENFDPKNLVMTTAADNGKKESNGAPKDTYPAFPGWYADVSWPGEAHIYKMEKIIFQGKSEFQELLVFESSRHGKVAILDGYIQLTENDEFAYQEMLTHLALCSIPNPKKVLLVGGGDGGILREISRHSSVEHIDICEIDKMVIHVYKKFFPDIAVGYEDPRVHVHIRDGIAFINSVPEGTYDVIILDAFQPMGPIAEVLADKCFLESVAKALRPGGVLSAPADSLWLKNFVVADTIANCKKIFKGSVNYAWTTKFLVRSVYLFLFTSGVIGFMLCSTEGPPVNFKHPTNKLNPEQNGVAKGPPKFYNPEIHAAAFCLPSFVDKVVDLKRY 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00345 349 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 129 142 IPR030373 -
Gma05g00345 349 Gene3D Vaccinia Virus protein VP39 103 347 IPR029063 -
Gma05g00345 349 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 53 343 IPR029063 -
Gma05g00345 349 Pfam Spermine/spermidine synthase domain 108 303 - -
Gma05g00345 349 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 52 296 IPR030374 -
Gma05g00345 349 Hamap Polyamine aminopropyltransferase [speE]. 53 345 IPR001045 GO:0003824
Gma05g00345 349 CDD AdoMet_MTases 150 237 - -
Gma05g00345 349 Gene3D Spermidine synthase, tetramerisation domain 52 102 IPR037163 -
Gma05g00345 349 PANTHER SYNTHASE 1, PUTATIVE-RELATED 1 344 - -
Gma05g00345 349 Pfam Spermidine synthase tetramerisation domain 53 105 IPR035246 -
Gma05g00345 349 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 344 IPR001045 GO:0003824
Gma05g00345 349 TIGRFAM speE: spermidine synthase 54 339 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00345 Gma-Chr5 3201376 3204082 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00345 K00797 - gmx:100809346 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00345 05 3201376 3204082 Gma17g00854 17 7261048 7264010 ECH
Gma05g00345 05 3201376 3204082 Gma05g00345 05 3201376 3204082 ECH
Gma17g00854 17 7261048 7264010 Gma05g00345 05 3201376 3204082 GST