Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00844 ATGAAGGAAACCTCAAGTCCAATAAAGAACCTAAGGAGTTCCTTGATTCCACAAAGAAGACAAAGTGTTGGTCCAAATTTTCCTGTTAATAGGGTGATTGGCACTTCCTCAATTGATAGGCTTCATGAAAATgatctcagcagcaaagagattattgggcgtgtttgtgatgagaacacgtatcaactacctcctcgtagcaatcgaggaaaaccaccaaatGGCAAACATGAATCAGCCTTGGAGCATCTTGTTTTGGCCAGCATGGCAATGGTAGCAAATGCCCAAGACGTGGAAGTAGCATCTGTTGATTGCAACATTGGAGACACAAACTTATCCTTGGCTAGATATGATGAGGCCATCTTTGCATATGAGAGAGCTTTGACAGTTTACAAGACTCACAAAGGTGAGAATCATCCTTCGGTGGGATCAGTCTATGTAAGCCTCGCCGACTTGCATTGCAGGACATGGAAGGTAAGGGAATCAAAATCATATTGTGAGAGTGCACTTAAAATCTATGAGAATCCCATGCTTGGAGTCCCTCCAGAGGAGGTTGCTAGTGGTTTTATGAATGTCTCGGCCATTTATGAGTCAATGAATGAGCTAGAACAAACACTTAAGTTGCTTCACAAGGCACTAGAGATACTTAATGAAGGCTCTGGTCAGCAAAACACAATAGCAGGAATTGAAGCATAG 696 0.3678 MKETSSPIKNLRSSLIPQRRQSVGPNFPVNRVIGTSSIDRLHENDLSSKEIIGRVCDENTYQLPPRSNRGKPPNGKHESALEHLVLASMAMVANAQDVEVASVDCNIGDTNLSLARYDEAIFAYERALTVYKTHKGENHPSVGSVYVSLADLHCRTWKVRESKSYCESALKIYENPMLGVPPEEVASGFMNVSAIYESMNELEQTLKLLHKALEILNEGSGQQNTIAGIEA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00844 231 SUPERFAMILY TPR-like 97 215 IPR011990 GO:0005515
Gma17g00844 231 Pfam Tetratricopeptide repeat 100 175 - -
Gma17g00844 231 Gene3D Tetratricopeptide repeat domain 84 231 IPR011990 GO:0005515
Gma17g00844 231 PANTHER KINESIN LIGHT CHAIN 74 231 - -
Gma17g00844 231 Coils Coil 199 219 - -
Gma17g00844 231 ProSiteProfiles TPR repeat profile. 101 134 IPR019734 GO:0005515
Gma17g00844 231 SMART tpr_5 101 134 IPR019734 GO:0005515
Gma17g00844 231 SMART tpr_5 186 219 IPR019734 GO:0005515
Gma17g00844 231 SMART tpr_5 143 176 IPR019734 GO:0005515
Gma17g00844 231 MobiDBLite consensus disorder prediction 1 23 - -
Gma17g00844 231 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 74 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00844 Gma-Chr17 7148596 7152147 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00844 - - gmx:100813461 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00354 05 3315206 3318144 Gma17g00844 17 7148596 7152147 ECH
Gma17g00844 17 7148596 7152147 Gma17g00844 17 7148596 7152147 ECH
Gma17g00844 17 7148596 7152147 Gma05g00354 05 3315206 3318144 GST
Gma17g00844 17 7148596 7152147 Gma06g01631 06 16088437 16092692 PCT
Gma06g01631 06 16088437 16092692 Gma17g00844 17 7148596 7152147 PCT