Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00842 ATGATGGCTCTCAATATCTCTTCTCCTGCTGAAGTCAAGTCCATTTTTTTCGCTGATTACTTCAAGTCTAACTGCATCACTGCAAAGTTCACAGGTGGTTTTGCTTTTAAGAGAAAAGAGCGTGGAGCTGCATCTGGAGGGCGAGTTTGTTGCTCAGTGCTGGCACCACCACCACCGGCCTGGCCGGGACGAGCGGTTCCAGAGCAAGGCAGCAAGACTTGGGATGGACCAAAACCCATTTCAATTGTTGGGTGTACTGGTTCAATTGGAACTCAGACACTAGATATTGTGGCAGAGAATCCAGATAAGTTTAAAGTTGTGGCACTTGCAGCTGGTTCAAATGTTACTCTTCTTGCAGACCAGGTAAAAAGATTTAAGCCTCAACTTGTTGCTGTTAGAAATGAGTCCCTAATTGCTGAACTTAAAGAGGCCTTGCATGACGTTGAAGAAAAACCTGAGATCATCCCTGGAGAGCAGGGAATCATTGAGGTTGCTCGTCACCCAGATGCAGTCAGTGTAGTCACAGGAATAGTAGGCTGTGCAGGACTGAAGCCAACAGTTGCTGCGATAGAAGCAGGGAAATACATAGCTTTAGCCAACAAAGAGACATTGATTGCTGGAGGTCCTTTTGTTCTTCCTCTTGCTCAGAAGCATAATGTAAAAATACTTCCAGCTGATTCAGAACATTCTGCCATCTTTCAGTGTATCCAGGGGTTGCCAGAGGGTGCACTTAGGAGAGTTATTTTAACTGCATCTGGAGGTGCTTTCAGGGATTGGCCAGTTGATAAACTGAAAGATGTTAAAGTTGCTGATGCATTAAAACATCCTAACTGGAATATGGGGAAAAAGATAACTGTGGACTCTGCTACCCTTTTTAATAAGGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCTGACTATGATCATATTGAGATTGTCATTCATCCACAATCAATCATACATTCAATGATTGAAACACAGGATTCATCTGTTCTTGCACAGTTGGGGTGGCCTGATATGCGTTTGCCAATCCTCTATACATTATCATGGCCTGACAGGATTTATTGTTCTGAAGACACTTGGCCCTGCCTTGATCTTTGCAAGATTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCATGAATCTTGCCTATGCTGCTGGCCGTGCTGGAGGCACAATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAAGATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCATCAAAATGAATTGTTATCCTCTCCTTCCCTTGAGGAAATCATTCACTATGACCTGGATGTGGCTGCTGGTGCTTCCCAATTGCCTGCTTTCACCATAATTTCTTCAGACTTGGAGATAGAAACGGACTTGGTGGTTGCTCTCTTGTTTAGGACCTGGTTCTCCACTTTGCCACTCGTCAGTCTTTCCTTTCGTTCTGCTCTCACCCAGTGTTGTGCCTTCATTTTGCTCGAAGAAAAACAGAGTGAGCATAATGGACTTGCGCCACAGCGCCGCGGTCGCCGATCTGTTAGTTGTCACAACGTGGCAGCCACAATCAGCTTCCCACTTTCTCGCACAAAATCAATGACCTTGAGGGTCTTGCTACAGAATGAATTAGAGTCCTTAGGAGATCACATTTTCCTCATCGCGGGATCTAGTTTTGGCTTCTTGATCCTAAATATTTTATTGTTGTTGTTAGTTTATGATGCTGATGCTCTGTTTTTTTTTTATTATCTTTTATGGAAAGATAAGAATATCTGCTTTCAGCTTTTACCACATTTGGGGGTTTTTGTTTTGATTATAGGTTTGGTGGTGGTGATGTTGGAATTTGATGAGCGTTTACAAATCGAGGAGAGGATCCGATGA 1932 0.4281 MMALNISSPAEVKSIFFADYFKSNCITAKFTGGFAFKRKERGAASGGRVCCSVLAPPPPAWPGRAVPEQGSKTWDGPKPISIVGCTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVKRFKPQLVAVRNESLIAELKEALHDVEEKPEIIPGEQGIIEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKYIALANKETLIAGGPFVLPLAQKHNVKILPADSEHSAIFQCIQGLPEGALRRVILTASGGAFRDWPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGADYDHIEIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTLSWPDRIYCSEDTWPCLDLCKIGSLTFKTPDNVKYPSMNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCEKHQNELLSSPSLEEIIHYDLDVAAGASQLPAFTIISSDLEIETDLVVALLFRTWFSTLPLVSLSFRSALTQCCAFILLEEKQSEHNGLAPQRRGRRSVSCHNVAATISFPLSRTKSMTLRVLLQNELESLGDHIFLIAGSSFGFLILNILLLLLVYDADALFFFYYLLWKDKNICFQLLPHLGVFVLIIGLVVVMLEFDERLQIEERIR 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00842 643 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 203 340 - -
Gma17g00842 643 Pfam DXP reductoisomerase C-terminal domain 337 455 IPR026877 -
Gma17g00842 643 Gene3D - 72 226 - -
Gma17g00842 643 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 222 305 IPR013644 GO:0005515
Gma17g00842 643 Gene3D - 382 465 - -
Gma17g00842 643 Coils Coil 131 151 - -
Gma17g00842 643 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 80 463 IPR003821 GO:0008299|GO:0030604|GO:0046872
Gma17g00842 643 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE-RELATED 2 458 - -
Gma17g00842 643 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 2 458 IPR003821 GO:0008299|GO:0030604|GO:0046872
Gma17g00842 643 TIGRFAM Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 78 455 IPR003821 GO:0008299|GO:0030604|GO:0046872
Gma17g00842 643 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 80 208 IPR013512 GO:0070402
Gma17g00842 643 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 370 457 IPR036169 -
Gma17g00842 643 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 77 226 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00842 Gma-Chr17 7126148 7132205 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00842 K00099 - gmx:100784845 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00842 17 7126148 7132205 Gma17g00842 17 7126148 7132205 ECH
Gma17g00842 17 7126148 7132205 Gma05g00356 05 3333300 3338162 GST