Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00820 ATGCCATCAACAGTGAGGGATCACGGGATTGTTCGGAGGATGGCAAGTCTCCCTCGAAGCATAATGGAGTTTATAGGAAGAGGAAGAAGAAGAAATCAGCACACAAATTTTCCTTTGCAGCCTCAAGACCACCATCATGATCCACAACCACATGGTCAAGTAGTAGTTCAAGATGAATGGAGTTTTCTAGAGAGTTTTGAGCAGCAATTTGGCACCAAACATCCTTTCTTCTATGCTTGCCGGTTCATGGAAGCTATTAAGTTAGCTGAGCATGATCACAAGTTCTTGTTCATGTACCTCCACTCGCCTGACCACCCTTTTGCAAACGTTTTCTGCAAGGAAACGCTGTGTTCAGAGCCGGTGATCCAGTTTCTTGATGTGAATTTTGTTTGCTGGGGTGGACTTGTGGATAGAGGAGAGGGTGTGCAAATGGTAGCAACACTAAGTCCTGCTACTTTTCCTTGTTGTGCTGTCATAGCCCCCACTCCTGGTGAGAGCATAGCAGTGCTGCAACAGCTAGAGGGACCCCTTTCGCCAGCTGAGCTAGCAGGGATTCTACAAAGAACATTGGAAGAACAAGGGGTGGCTTTTGGAAGTGATAGGGCTAAGCAGGAAGAAAAGATCCGAGCAGACCGTAGGCTTAGAGAAGAGCAAGATGCTGCATATCTTGCAGCTTTGCAAATTGACAAGGAAAAAGACAAACCGAATAGTTTACCTCCAAGAGAGAGACTTCAGAAGCCGGGTGAAGCTCACAACAACAGAAATTATGGGAAATTGTTGAACAATTCTATCAATGTCACTAAACAGAACAGCAAAGTGAATGAGTCCAATAAAGAAAAACGAGACAAGGGAGTTGCAAGTAAAGGAAGCGAGTCTCAGCCCACACAGATACTCATAAGGTTTCCAAACGGGGAAAGAAGAGAGCATACTTTCCTTTACACAGACAGAATCCAGTCCATTTTCTCATACATTGATTCATTAGGTTTGCCATGGATTGGAAACTACAGATTGATATCAAATTTTCCAAGAAGAGCTTATGGAGTTGATCAAATGAGAATGACTCTCAAAGAGGCTGGCCTGTATCCTAAAGCTAGTGTGTTCCTGGAGCCTTTAGGAACTAGAGTCCCATAA 1131 0.4412 MPSTVRDHGIVRRMASLPRSIMEFIGRGRRRNQHTNFPLQPQDHHHDPQPHGQVVVQDEWSFLESFEQQFGTKHPFFYACRFMEAIKLAEHDHKFLFMYLHSPDHPFANVFCKETLCSEPVIQFLDVNFVCWGGLVDRGEGVQMVATLSPATFPCCAVIAPTPGESIAVLQQLEGPLSPAELAGILQRTLEEQGVAFGSDRAKQEEKIRADRRLREEQDAAYLAALQIDKEKDKPNSLPPRERLQKPGEAHNNRNYGKLLNNSINVTKQNSKVNESNKEKRDKGVASKGSESQPTQILIRFPNGERREHTFLYTDRIQSIFSYIDSLGLPWIGNYRLISNFPRRAYGVDQMRMTLKEAGLYPKASVFLEPLGTRVP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00820 376 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 8 370 - -
Gma17g00820 376 MobiDBLite consensus disorder prediction 255 272 - -
Gma17g00820 376 SMART ubx_3 287 370 IPR001012 GO:0005515
Gma17g00820 376 MobiDBLite consensus disorder prediction 32 51 - -
Gma17g00820 376 Pfam UBX domain 291 369 IPR001012 GO:0005515
Gma17g00820 376 PANTHER FAS-ASSOCIATED PROTEIN 8 370 - -
Gma17g00820 376 SUPERFAMILY Thioredoxin-like 56 195 IPR036249 -
Gma17g00820 376 MobiDBLite consensus disorder prediction 226 296 - -
Gma17g00820 376 ProSiteProfiles UBX domain profile. 290 368 IPR001012 GO:0005515
Gma17g00820 376 CDD UBX 297 369 - -
Gma17g00820 376 MobiDBLite consensus disorder prediction 226 249 - -
Gma17g00820 376 CDD UAS 82 192 - -
Gma17g00820 376 Gene3D - 289 370 - -
Gma17g00820 376 SMART 45neu3 61 187 IPR006577 -
Gma17g00820 376 SUPERFAMILY Ubiquitin-like 288 371 IPR029071 -
Gma17g00820 376 MobiDBLite consensus disorder prediction 273 287 - -
Gma17g00820 376 Gene3D Glutaredoxin 51 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00820 Gma-Chr17 6905507 6907436 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00820 K18726 - gmx:100775212 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00820 17 6905507 6907436 Gma17g00820 17 6905507 6907436 ECH
Gma17g00820 17 6905507 6907436 Gma05g00378 05 3527306 3527618 GST