Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00796 ATGGACTCTGCTCTAGTGATCAAGGTGAAATATGGAGATACCCTCAGGCGCTTCAGTGCTCGTGTTGATGAGAATAATCGGCTGGAACTTGACATGGTTGACTTGAGGGCAAAGATATGTTCTATCTTCAGTTTCAGTGCTGATGCAAATTTAATTCTGAGATATGTTGATGAAGATGGTGACTTGGTGACTCTAGTTGATGATGATGAATTGCGTGATGTGATGAGGCAGCAATTGAAGTTCTTGAAAATTGATGTACACATGAACAATGACAGTGGGGGTAAATCAAATGCTGGGTCTAGTGGAAGTGCCACCCCCATAGAATCTTGTCCTGCCTCAAGCCCATTTCTGTTTAGAAATGCTATGCTACGTGAACATCTTTCTAAAAAAGCAGCATCTTCAAGTCCTGTGGTTGATAATCTTGCTGATTCAATTTTGAAAATGGGACTAATCCAGCCTGGTGATGCAGCTGGTAGAAGTTCAAAAACTAGTGTTCCTGAAGAACCTATCCCTAAAGCAATGGGTCCACAATCTTCACATGTGGACTCAGCTTCCAATGCCAGTGTCAATAGTGATAGTGCCACCCTGTTGAGATCTCCAATTCCAAACCCATCTCTGAGTGGAAATGCTGTTAAAGTTGACATCTCATGCTCTCCTCATGTTTCAACCGGTCCATTCACAAAAAATGGTGTTCCTGAAGAACCTATCACTTTTGAAGCAAGAGGTCAACAGATCCCATCTGCAGACTTGGCTTTCAATGCCACTCAACAAGTGGAGGCAGGAGTTGCCCCTGTTGATCTCAATGTCCCTCCTTTTGATCCTTTTTTAGCTCAGTTCCCTGATGGTGATGGCAAGAAGGGTGAAATGCTGGCTGTCAATAGTTCTGCTAGTAAGGATGACAATAGTGGGATATGCTCAAGTTCTGCTGGTCCTAATAACAATTCTACCCAGACTACATCATTGACTTCTGGTGCTTTCATTGACTGTCCTGGGTCATATTATTCTTGGCCACCTCCACTTCCTGGAAACTATAAAATGCCCCCATTTAAAAGGAGCCATAGTCACACTGATGCAATGTCTGGTATGTTCCATAAGGGGGTCCGCTGTGATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTAAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGGGACAGATTACATCAGAATGGACCACCCTGCATCTGCTCGTGGCCCTCGATGCGTATATGGACATACAAAAAACTTTCCAACATTACCACCACATATTTTAAAGAAAGGTGCCATTTTGAAGCATGCAAGGCCAAGGCTAGATAGTCGGTTTATTTTGGATGTCAATGTGATAGATGGTACAATGATGGCTCCGTCTACCGCATTTACAAAGATCTGGCGGATACGCAATAATGGCTCTATAGTCTGGCCCAAGGGAACTCAACTTGTTTGGATTGGAGGAGACAAGTTTAGTGACTTTCATTTAGTTGACTTACAGGTTCCCGAGGATGGTGTCCCTGTGGAGAAGGAACTTGACATTGCAGTTGACTTTACAGCACCTCCGTTACCTGGTCGATACATATCATACTGGAGGATGACAACTCCATCTGGACATAAATTTGGCCAACGTGTTTGGgtccttatacagGTTGATGCATCTCTCCAGGACTCATTTTATGATACCTCTCAAGGTCTGAACTTGAATATTCCCCTTGATATCAGTGGCTCTAAAGGACCTCAGATTATAGATATCAATGTCCAGCCTACTGAGGAAGATACTGTTCTTCAAACCCGCAATCCTAATGCTCCCATTGAACCTGTGAATCAAATGGTTGATAAtgaaccaaggtttgagctggaaaatgaattccctataaatgaagctacatttgTTGGCCCTGCTGCCTCAGCCCCTGCTGCAACCCCTGTGGCATCTTCATCAGTTTCTTATCCTATTATTGATTTATCTGAAACAACCCCAGCTGTTCCATCTAATCAGCAATCCTCAACTGTGGATGTGCCTTCATCATCTATGGGGACTGGTGGAATTAATTCTGTGGAGGAGAGTCTACTTAAAGAGCTTGAGGAGATGGGTTTTAAACAGAGTTACGGGAGATGGGTTCCCGTGACAGAGATGAATAAGAGGCTGCTTGAGAAAAACAATGGAAGCCTCAAACGTGTTGTTATGGATTTAATCAACGGCGAGTAG 2235 0.421 MDSALVIKVKYGDTLRRFSARVDENNRLELDMVDLRAKICSIFSFSADANLILRYVDEDGDLVTLVDDDELRDVMRQQLKFLKIDVHMNNDSGGKSNAGSSGSATPIESCPASSPFLFRNAMLREHLSKKAASSSPVVDNLADSILKMGLIQPGDAAGRSSKTSVPEEPIPKAMGPQSSHVDSASNASVNSDSATLLRSPIPNPSLSGNAVKVDISCSPHVSTGPFTKNGVPEEPITFEARGQQIPSADLAFNATQQVEAGVAPVDLNVPPFDPFLAQFPDGDGKKGEMLAVNSSASKDDNSGICSSSAGPNNNSTQTTSLTSGAFIDCPGSYYSWPPPLPGNYKMPPFKRSHSHTDAMSGMFHKGVRCDGCGVYPITGPRFKSKVKENYDLCNICFNEMGNGTDYIRMDHPASARGPRCVYGHTKNFPTLPPHILKKGAILKHARPRLDSRFILDVNVIDGTMMAPSTAFTKIWRIRNNGSIVWPKGTQLVWIGGDKFSDFHLVDLQVPEDGVPVEKELDIAVDFTAPPLPGRYISYWRMTTPSGHKFGQRVWVLIQVDASLQDSFYDTSQGLNLNIPLDISGSKGPQIIDINVQPTEEDTVLQTRNPNAPIEPVNQMVDNEPRFELENEFPINEATFVGPAASAPAATPVASSSVSYPIIDLSETTPAVPSNQQSSTVDVPSSSMGTGGINSVEESLLKELEEMGFKQSYGRWVPVTEMNKRLLEKNNGSLKRVVMDLINGE 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00796 744 Gene3D Immunoglobulins 444 563 IPR013783 -
Gma17g00796 744 ProSiteProfiles Zinc finger ZZ-type profile. 364 414 IPR000433 GO:0008270
Gma17g00796 744 PANTHER PROTEIN JOKA2 1 153 - -
Gma17g00796 744 PANTHER PROTEIN JOKA2 720 744 - -
Gma17g00796 744 PANTHER PROTEIN JOKA2 301 710 - -
Gma17g00796 744 Pfam Ig-like domain from next to BRCA1 gene 458 559 IPR032350 -
Gma17g00796 744 MobiDBLite consensus disorder prediction 178 198 - -
Gma17g00796 744 Gene3D - 688 744 - -
Gma17g00796 744 CDD NBR1_like 447 560 IPR032350 -
Gma17g00796 744 SMART zz_5 363 408 IPR000433 GO:0008270
Gma17g00796 744 ProSiteProfiles PB1 domain profile. 4 86 IPR000270 GO:0005515
Gma17g00796 744 MobiDBLite consensus disorder prediction 295 319 - -
Gma17g00796 744 MobiDBLite consensus disorder prediction 668 689 - -
Gma17g00796 744 SMART PB1_new 4 89 IPR000270 GO:0005515
Gma17g00796 744 SUPERFAMILY CAD & PB1 domains 3 79 - -
Gma17g00796 744 MobiDBLite consensus disorder prediction 153 198 - -
Gma17g00796 744 Pfam PB1 domain 6 77 IPR000270 GO:0005515
Gma17g00796 744 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 153 - -
Gma17g00796 744 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 720 744 - -
Gma17g00796 744 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 301 710 - -
Gma17g00796 744 Gene3D - 356 415 IPR043145 -
Gma17g00796 744 Gene3D - 1 88 - -
Gma17g00796 744 Pfam Zinc finger, ZZ type 364 399 IPR000433 GO:0008270
Gma17g00796 744 SUPERFAMILY RING/U-box 360 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00796 Gma-Chr17 6678351 6682423 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00796 K17987 - gmx:100816395 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00796 17 6678351 6682423 Gma17g00796 17 6678351 6682423 ECH
Gma17g00796 17 6678351 6682423 Gma05g00397 05 3738976 3746304 GST