Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00397 ATGAGCAAGATTGTCATAATCATAACGTTGTTGATCGCCGTGACCGCGTCCTGTTTTGTCTGCCTGTTACGTGATCGAAAAACTGAAGGATTCTATTTGCTATTGGCGCTTGTGACTATTGCATCAGCGATGGTGTTGGCTTTCCGAGCCACAATGGAGACATTTATCACAGTCCTGGTGCTTCTTGCATTTGCAGGTTACCGTCGCAGGGTTTTGATTCAACAAAGATGGCGAATTTCCCTTCATGTGGGGTGGTGTTTGCTCGATCAGCCTTATATTCAGATCAAAGAAGGGGCTCTTCGCTCTGGCTTGTGCCACCTTTTTCAGCTTGTTTGCCACCTATTGATGAATGAAGTAAATGCAATTAAATTGCAACTCTCCAAATTCTTTTCCGAAGAAGAAGCCTCGTCTCCGATTAGGGTTAGGGTTTCAGTGTTCTCTCTTCCTTCCGTGTCACTGTTACGCTTCCCTTCGTCGGTCCTCGCTTGCGCTCCGAGAGCTATGGACTCTGCTCTTGTGATCAAGGTGAAATATGGAGATACCCTCAGGCGCTTCAGTGCTCATGTTGATGAGAATAATAGGCTGGATCTTGACATGGTTGGCTTGAGGGCAAAGATATGTTCTATCTTCAGTTTCAGTGCTGATGAAAATTTAATTCTGAGATATGTTGATGAAGATGGCGACCTGGTGACTCTAGTTGATGATGATGATTTGCGTGATGTGATGAGGCAGCAATTGAAGTTCTTGAGAATTGATGTACATATGAACAATGACGGTGGTGATAAATCAAATGCTGGCTCTAGTGGAAGTGCCACCCCCTCAGAAACTTGTCCTGTCACAAGCCCATTTCTGCTTAGAAATGCTATGCCTCCTGATACAGCTGGTAAAAGCTCAAAAACTGGTGTTCCTGAAGAACCTATCACTAAAGCAATGGGTCCACAATCTTCACATGTGGACTCAGCCTCCAATGCTAGTGTCAATAGTGATAGTGCTACCCCCATAAGATCTCCAATTCCAAACCCTTATCTAAGTGGAAATGCTGTTAAAGTTGACGTCTCATGTTCTgtgcccgaaccagtacgccagtttttttccaaatcatcaagttcaaatgctgctgcgtcttcaagtcagctgcctgcaaatctcgctgatttaatttccctagtgcctgaaccagtacgcgagtttctttccaatttatcacattcaaatgctgcatcttcaaatcagctgcctgttaatctcactgatttagtttccctaCTGGGACAATCTATTCTAAATTCTCATTGCCAGCCTCATGTTGCAACTGGTCCATTCGCAAAAAATGGTGTTACTGAAGAACCTATCACTTCTGAAGCAAGAGGTCAACAGATCCCATCTGCAGACTCGGCTTCCAATGCCACTCAACAGGTGGAGGCAGGAGTTGCCACTATTGATCTCAATGCCCCTCCTTTTGATCCCTTTTTAGCTCAGTTCACTTGTGAAAATAAGGCTCCACTTTCATCAGAAGCTCCTAATGGTCATGGCAAGAAGGGTAAAATGCCGACTGTCGATAGTTCTGCTGGTAAGGGTGACAGTAGTGGGATATCCTCAAGTTTTGCTGCTCCTAATAATTCAACCCAGACTACATCATTGACTTCTGGTGCTTTCATTGAATGCCCATTTGCTGGGACATATATTAATTCTTGGACACCACTTCCTGGAAACTCTCAAATGCCCCCATTTAAAAGGAGCCATAGTCACACTGATGCAATGTCTGGTATGTTCCATAAGGGGGTCCGCTGTGATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTAAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGGGACAGATTATATCAGAATGGACCGCCCTGCATCTGCTCGGGCCCCTCGATACTTACATGGACATACAAAAAACTTTCCAACATTACCACCACATATTTTTAAGAAAGGTGCCATTTTGAAGCATGCAAAGCCAAAACTAGATAGTAGGTTTATTTTGGATGTTAATGTGATAGATGGTACAATGATGGCTCCATCTACTGCATTTACAAAGATCTGGCGGATGCGCAATAATGGCACTATAGTCTGGCACAAGGGAACTCAACTTGTTTGGATTGGAGGAGACAAGTTTAGTGACTCTCATTCAGTTGACTTAGAGGTTCCTGAGGATGGTGTCCCTTTGGAGAAGGAACTTGACATTGCCGTTGACTTCACAGCACCTCCATTACCTGGTCGTTACATATCATATTGGAGGATGACAACTCCATCTGGACATCAATTTGGCCAACGTGTTTGGGTCCTTATACAGGTTGATGCCTCTCTCAAGGACTCATTTTATGATAACTCTCAAGGTCTGAACTTGAATATTCCCCTCGATATCAGTGGCTCTAAAGGACCTCATATTATAGATATCAATGTCCAGCCTACTGAGGATGATACTGTTCTTCAAACCCGCAAGCCTAATGCTCCCATTGAGCCTTTGAATCAAATGGTTGATGAGGAACCAAGGTTGGAGCTGGAAAACGAATTCCCTATAAATGAAGCTACATTTGTTGCCCCTGTTGCCTCAGCCCCAGCTGCAACCTCTGTGGCATCTTCATCAGTGCCTTGTCCTATAATTGATCTGTCTGAAACAACCCCAGCTGTTCCATCTAATCAGCAATCCCCAACCGTGGATGTGCCATCGTCATCTATGGGTACTGGTGGAGGAATTAATTCTGTGGAGGAGAATCTACTTAAAGAGCTTGAGGAGATGGGTTTTAAACAGGTTGATTTGAACAAGGAGATCTTGAGGAAGAATGAGTACGATCTGGACCAATCCCTAGACGCTCTCTGTGGTGTTGATGTCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATGGGTTTTCGTGACAAAGAGATGAATAAGAGACTGCTTGAGAAAAACAATGGAAGCCTCAAACGTGTTGTTATGGATTTAATAAACGGCGAGTAG 3039 0.4097 MSKIVIIITLLIAVTASCFVCLLRDRKTEGFYLLLALVTIASAMVLAFRATMETFITVLVLLAFAGYRRRVLIQQRWRISLHVGWCLLDQPYIQIKEGALRSGLCHLFQLVCHLLMNEVNAIKLQLSKFFSEEEASSPIRVRVSVFSLPSVSLLRFPSSVLACAPRAMDSALVIKVKYGDTLRRFSAHVDENNRLDLDMVGLRAKICSIFSFSADENLILRYVDEDGDLVTLVDDDDLRDVMRQQLKFLRIDVHMNNDGGDKSNAGSSGSATPSETCPVTSPFLLRNAMPPDTAGKSSKTGVPEEPITKAMGPQSSHVDSASNASVNSDSATPIRSPIPNPYLSGNAVKVDVSCSVPEPVRQFFSKSSSSNAAASSSQLPANLADLISLVPEPVREFLSNLSHSNAASSNQLPVNLTDLVSLLGQSILNSHCQPHVATGPFAKNGVTEEPITSEARGQQIPSADSASNATQQVEAGVATIDLNAPPFDPFLAQFTCENKAPLSSEAPNGHGKKGKMPTVDSSAGKGDSSGISSSFAAPNNSTQTTSLTSGAFIECPFAGTYINSWTPLPGNSQMPPFKRSHSHTDAMSGMFHKGVRCDGCGVYPITGPRFKSKVKENYDLCNICFNEMGNGTDYIRMDRPASARAPRYLHGHTKNFPTLPPHIFKKGAILKHAKPKLDSRFILDVNVIDGTMMAPSTAFTKIWRMRNNGTIVWHKGTQLVWIGGDKFSDSHSVDLEVPEDGVPLEKELDIAVDFTAPPLPGRYISYWRMTTPSGHQFGQRVWVLIQVDASLKDSFYDNSQGLNLNIPLDISGSKGPHIIDINVQPTEDDTVLQTRKPNAPIEPLNQMVDEEPRLELENEFPINEATFVAPVASAPAATSVASSSVPCPIIDLSETTPAVPSNQQSPTVDVPSSSMGTGGGINSVEENLLKELEEMGFKQVDLNKEILRKNEYDLDQSLDALCGVDVCGVSEWDHMLEELQEMGFRDKEMNKRLLEKNNGSLKRVVMDLINGE 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00397 1012 Gene3D - 919 966 - -
Gma05g00397 1012 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 167 292 - -
Gma05g00397 1012 SUPERFAMILY RING/U-box 588 642 - -
Gma05g00397 1012 Pfam PB1 domain 173 251 IPR000270 GO:0005515
Gma05g00397 1012 MobiDBLite consensus disorder prediction 895 918 - -
Gma05g00397 1012 CDD UBA_NBR1 971 1009 - -
Gma05g00397 1012 MobiDBLite consensus disorder prediction 313 338 - -
Gma05g00397 1012 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Gma05g00397 1012 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 923 961 IPR015940 -
Gma05g00397 1012 Pfam Zinc finger, ZZ type 592 627 IPR000433 GO:0008270
Gma05g00397 1012 SMART PB1_new 171 256 IPR000270 GO:0005515
Gma05g00397 1012 MobiDBLite consensus disorder prediction 501 540 - -
Gma05g00397 1012 MobiDBLite consensus disorder prediction 257 338 - -
Gma05g00397 1012 MobiDBLite consensus disorder prediction 260 281 - -
Gma05g00397 1012 SUPERFAMILY UBA-like 972 1010 IPR009060 GO:0005515
Gma05g00397 1012 ProSiteProfiles Zinc finger ZZ-type profile. 592 642 IPR000433 GO:0008270
Gma05g00397 1012 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 970 1011 IPR015940 -
Gma05g00397 1012 Gene3D - 584 654 IPR043145 -
Gma05g00397 1012 SUPERFAMILY CAD & PB1 domains 157 247 - -
Gma05g00397 1012 SMART zz_5 591 636 IPR000433 GO:0008270
Gma05g00397 1012 Gene3D - 969 1011 - -
Gma05g00397 1012 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 445 1012 - -
Gma05g00397 1012 Pfam Ig-like domain from next to BRCA1 gene 686 787 IPR032350 -
Gma05g00397 1012 CDD NBR1_like 675 788 IPR032350 -
Gma05g00397 1012 Gene3D - 167 255 - -
Gma05g00397 1012 Gene3D Immunoglobulins 671 791 IPR013783 -
Gma05g00397 1012 PANTHER PROTEIN JOKA2 445 1012 - -
Gma05g00397 1012 PANTHER PROTEIN JOKA2 167 292 - -
Gma05g00397 1012 MobiDBLite consensus disorder prediction 522 540 - -
Gma05g00397 1012 ProSiteProfiles PB1 domain profile. 171 253 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00397 Gma-Chr5 3738976 3746304 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00397 K17987 - gmx:100778692 1607.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00397 05 3738976 3746304 Gma05g00397 05 3738976 3746304 ECH
Gma17g00796 17 6678351 6682423 Gma05g00397 05 3738976 3746304 GST