LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma17g00747	ATGGCAATGCCGGAGACAATCCCTCCCACTACTCCCAGTGCTCAAGTTGTCGGCAATGCCTTTGTGGAGCAATATTATCACATTCTGCATCAATCCCCAGAATTGGTGCACAGATTTTATCAGGATTCAAGTTTCTTAACCAGATCAGACAGCAATGGTGTGATGACAACTGTGACAACTGTACAAGAAATCCATGAAAAGATTATTTCCCTGAAATATGAAGATTATACAGCAGAAATAAAAACTGCAGACGCTCAGGAGTCACATAAGGGAGGTGTGATAGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTGAGAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGAAAAAGGATATTATGTCTTAAATGACGTCTTTAGGTTCATTGAGGAGAATGACACACCTCAGATAAATTCTTCCTCAGTAAGTGTCATCAATGAAAATGCTGAAGCAGTGCATGAGCCAGAATCAGAGGATCTGCATGCTCCCAAACATCTCGTGGAAGACAATGCAACTTTGGCAGAGGGTGAGAACCTTAATAATGGTGCTGAAGTTTATCATCCTCAGGATGAGGAAGAAGGATCAGTTATTGATGAAGAGGTTGCTGAACCCCCTACAGATTTAAGTCAGAATGATATTGTTACTGTTGATGATTCAACTTCTGCTGTCCTGGATGATGCACCAAGGAGATCATATGCAGCCATTGTCATGAAAAGTCATGTAGCATCTGGTCATGTCTATGTTCCCAGCCGAGCTGCAAGAATAGCATCTGCTAAATCCAGTGAACAATGGCCTACTACTGCCAAATCAACCCCTGTGCCTGAGGCATTAGCTCCTAGTAGTGATAGTGCACCTGGGAGCAGTGATGTTCATGAAGAAGCTGAAGGTCACTCCATATACATCCGGAACTTGCCATTTAATGCAACAGTTGAACAACTTGAAGAAGTCTTTAAGAAATTTGGTCCTATTAAGCATGGTGGTATCCAAGTTAGAAGTAGCAAGCACGGATTCTGTTTTGGATTTGTTGAATTTGAAGAATTGAGTTCCATGCACAGTGCACTTGAGGCTTCACCTATCACTGTTGGTGAGCGACAAGCTGTTGTTGAGGAAAAGAGAACTACCACACGAGTCAGCGGTAGTGGGAGAGGGAGGCACTCAGGAAGAGGTAGTTTCCGAAGCGACAGTTTCAGAGCACGTGGGAAATTTGGTGGTGGACGGGGTTATGGCAGAAATGAATTCAGAAACCAAGGAGAATTCTCAGGGCAACCTAGGAGTTCTCAACGGCCAAATCAAAATGGAGGTGGACGGGGCGGTGGACGTCAAGGTGTGGGGAACCGTAATTCTACACCATCAGCATCAACAGCATGA	1383	0.4396	MAMPETIPPTTPSAQVVGNAFVEQYYHILHQSPELVHRFYQDSSFLTRSDSNGVMTTVTTVQEIHEKIISLKYEDYTAEIKTADAQESHKGGVIVLVTGCLTGKDNVRRKFSQTFFLAPQEKGYYVLNDVFRFIEENDTPQINSSSVSVINENAEAVHEPESEDLHAPKHLVEDNATLAEGENLNNGAEVYHPQDEEEGSVIDEEVAEPPTDLSQNDIVTVDDSTSAVLDDAPRRSYAAIVMKSHVASGHVYVPSRAARIASAKSSEQWPTTAKSTPVPEALAPSSDSAPGSSDVHEEAEGHSIYIRNLPFNATVEQLEEVFKKFGPIKHGGIQVRSSKHGFCFGFVEFEELSSMHSALEASPITVGERQAVVEEKRTTTRVSGSGRGRHSGRGSFRSDSFRARGKFGGGRGYGRNEFRNQGEFSGQPRSSQRPNQNGGGRGGGRQGVGNRNSTPSASTA	460

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma17g00747	460	Pfam	Nuclear transport factor 2 (NTF2) domain	17	133	IPR002075	-
	Gma17g00747	460	PANTHER	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	1	452	IPR039539	-
	Gma17g00747	460	PANTHER	RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN	1	452	-	-
	Gma17g00747	460	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	304	361	IPR000504	GO:0003723
	Gma17g00747	460	CDD	RRM_SF	304	361	-	-
	Gma17g00747	460	SUPERFAMILY	NTF2-like	13	134	IPR032710	-
	Gma17g00747	460	SUPERFAMILY	RNA-binding domain, RBD	298	409	IPR035979	GO:0003676
	Gma17g00747	460	Gene3D	-	7	137	-	-
	Gma17g00747	460	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	302	378	IPR000504	GO:0003723
	Gma17g00747	460	MobiDBLite	consensus disorder prediction	371	460	-	-
	Gma17g00747	460	MobiDBLite	consensus disorder prediction	262	292	-	-
	Gma17g00747	460	MobiDBLite	consensus disorder prediction	262	299	-	-
	Gma17g00747	460	CDD	NTF2	13	135	IPR018222	-
	Gma17g00747	460	Gene3D	-	290	416	IPR012677	-
	Gma17g00747	460	MobiDBLite	consensus disorder prediction	420	439	-	-
	Gma17g00747	460	ProSiteProfiles	Nuclear transport factor 2 domain profile.	17	133	IPR018222	-
	Gma17g00747	460	SMART	rrm1_1	303	374	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma17g00747	Gma-Chr17	6286737	6293900	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma17g00747	K24983		-	gmx:100801253	805.053

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma05g00197	05	1840933	1848185	Gma17g00747	17	6286737	6293900	ECH
	Gma17g00747	17	6286737	6293900	Gma17g00747	17	6286737	6293900	ECH
	Gma17g00747	17	6286737	6293900	Gma05g00197	05	1840933	1848185	GST