Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00197 ATGGCAATGCCGGAAACAATCCCTCCCACTACTCCCAGTGCTCAAGTTGTCGGCAACGCCTTTGTGGAGCAATATTATCACATTCTGCACCAATCCCCAGAATTGGTGCACAGATTTTATCAGGATTCAAGTTTCTTAACCAGATCAGACAGCAATGGTGTGATGACAACTGTGACAACTGTACAAGAAATCCATGAAAAGATTATTTCCCTGAAATATGAAGATTATACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCACATAAGGGAGGTGTGATAGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTGAGAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGAAAAAGGATATTATGTCTTAAATGACGTCTTTAGGTTCATTGAGGAGAATGACACACCTCAGTTAAATTCTTCCACAGTAAGTGTCATCAATGAAAATGCTGAGGCAGTGCACGAGCCAGAATCAGAGGATCTGCATGCTCTCAAACATCTTGTGGAAGACACTGCAACTTTGGCAGAGGGTGAGAACCTTAATAATGGTGCTGAAGTTTATCATCCTCAGGATGAGGAAGAAGGATCAGTTATTGATGAAGAGGTTGCTGAACCCCCTACTGATTTAAGTCAGAATGATATTGTTACTGTTGATGATTCAACTTCTGCTGTCCCGGATGATGCACCAAGGAGATCATATGCAGCCATTGTAATGAAAAGTCATGTAGCATCTGGTCATGTCTATGTTCCCAGCCGAGCTGCAAGAATAGCATATGCTAAATCCAGTGAACAATTGCCTACTACTGCCAATGCCAAATCAACTCCTGCGCCTGAGGCATTAGCTCCTAGTAGTGATAATGCATCTGGGAGCAGTGATGTTCATGAAGAAGCTGAAGGTCACTCCATATACATACGGAACTTGCCATTTAATGCAACAGTTGAACAACTTGAAGAAGTCTTTAAGAAATTCGGTCCTATTAAGCATGGTGGTATCCAAGTTAGAAGTAGCAAGCACGGATTCTGTTTTGGCTTTGTTGAATTTGAAGAATTGAGTTCCATGCACAGTGCACTTGAGGCTTCACCTATCACTGTTGGTGAGCGACAAGCTGTTGTTGAGGAAAAGAGAACTACTACACGAGTCAGCGGTAGTGGGAGAGGGAGGTACTCAGGAAGAGGTGGTTTCCGAAGCGACAGTTTCAGAGCGCGTGGGAAATTTGGCAGTGGACGTGGTTATAGCAGAAATGAATTCAGAAACCAAGGAGAATTCTCAGGGCAACCTAGGAGTTCTCAACGGCCAAATCAAAATGGAGGTGGGCGTGGTGGTGGACGTCAAGGTGTGGGGAACCGTAATTCTACACCATCAGCTTCAGCAGCATGA 1389 0.437 MAMPETIPPTTPSAQVVGNAFVEQYYHILHQSPELVHRFYQDSSFLTRSDSNGVMTTVTTVQEIHEKIISLKYEDYTAEIKTADAQESHKGGVIVLVTGCLTGKDNVRRKFSQTFFLAPQEKGYYVLNDVFRFIEENDTPQLNSSTVSVINENAEAVHEPESEDLHALKHLVEDTATLAEGENLNNGAEVYHPQDEEEGSVIDEEVAEPPTDLSQNDIVTVDDSTSAVPDDAPRRSYAAIVMKSHVASGHVYVPSRAARIAYAKSSEQLPTTANAKSTPAPEALAPSSDNASGSSDVHEEAEGHSIYIRNLPFNATVEQLEEVFKKFGPIKHGGIQVRSSKHGFCFGFVEFEELSSMHSALEASPITVGERQAVVEEKRTTTRVSGSGRGRYSGRGGFRSDSFRARGKFGSGRGYSRNEFRNQGEFSGQPRSSQRPNQNGGGRGGGRQGVGNRNSTPSASAA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00197 462 SUPERFAMILY RNA-binding domain, RBD 301 408 IPR035979 GO:0003676
Gma05g00197 462 MobiDBLite consensus disorder prediction 267 294 - -
Gma05g00197 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 363 IPR000504 GO:0003723
Gma05g00197 462 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Gma05g00197 462 MobiDBLite consensus disorder prediction 377 462 - -
Gma05g00197 462 MobiDBLite consensus disorder prediction 207 231 - -
Gma05g00197 462 MobiDBLite consensus disorder prediction 267 301 - -
Gma05g00197 462 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Gma05g00197 462 MobiDBLite consensus disorder prediction 416 441 - -
Gma05g00197 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 380 IPR000504 GO:0003723
Gma05g00197 462 Gene3D - 7 137 - -
Gma05g00197 462 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 454 - -
Gma05g00197 462 SMART rrm1_1 305 376 IPR000504 GO:0003723
Gma05g00197 462 Gene3D - 295 411 IPR012677 -
Gma05g00197 462 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 454 IPR039539 -
Gma05g00197 462 CDD RRM_SF 306 363 - -
Gma05g00197 462 Coils Coil 461 462 - -
Gma05g00197 462 CDD NTF2 13 135 IPR018222 -
Gma05g00197 462 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00197 Gma-Chr5 1840933 1848185 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00197 K24983 - gmx:100816288 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00197 05 1840933 1848185 Gma17g00747 17 6286737 6293900 ECH
Gma05g00197 05 1840933 1848185 Gma05g00197 05 1840933 1848185 ECH
Gma17g00747 17 6286737 6293900 Gma05g00197 05 1840933 1848185 GST