Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00741 ATGGCACAAACACAAACCCAGAGACCCTGTTCAAGCGTCCTCGATTCTCTGGGGGAAGAAATTGTGAGAATCGTCGCACCCGTTTCAATATGCATGTTCCTGGTCGTAATCCTGGTCTCAATTCTCAACACCGATTCTTCTCTCTTCGTCGCATCGATGAGCATGGTCACCATCGCGTACAACGAAACAACCTCGGACTCCACCTGGGACAAGTTCCTAGGAGCCCTTCTGAACTCCTTAGCCTTCGTCGTCCTTGTCACCTTCGCAACCTTCGTCTTGGTCCTCCTCTTCTACTTCCGATGCACCAGGTTCTTAAAACTCTACATGGCTTTCTCCACTTTCATCGTGTTGTTATTCCTCGGCGGCGAAGTCTCGATCTTTTTGATCCAAAAGTTTAGTACTCCCATTGATTGCATCACGTTCTTCCTTGTTCTGTGTAATTTCGCTGTTGTGGGTGTTTTGACAGTGTTTATTTCGAAAATGGCGATTCTTGTGACGCAGGGGTATTTGGTTGTTGTTGGAATATTGGTTGCTTATTCGTTTACTATGTTGCCTGAGTGGACCACGTGGGCCCTACTTGTTGCTATGGCGTTGTATGATCTTGCTGCGGTTTTGTTGCCAATTGGGCCGTTAAGGATTTTGGTAGAGCTTGCAATTTCAAGGGATGAGGAAATTCCGGCATTGGTTTATGAGGCTAGGCCGGTGAAGCATGGTAGTTTGGATCCTAGGGAAGTCGCGCAGAGGCGGTTGTGGAGAGAAAGGAGGGTTCAGAGTTTGAATGCTAACAACTCAGTGTTGGCTCATGGCCCCAATAATGCTGAATCACACTCTGATTCGGGTGCGAACGCTGGCGATAACTGGGATGGCGCAAACTTGGTTAGGGAAAACGCGTCTTTGAATTCGAATTTGAATGCTGATAGTTCTGGTGGCTCCTATGGTTATGGAAATTTGGTGAGTGTGGAAGAGGGATGGCTGCGAGTTCAAGAGACTGATTCGGACCTTTCTGCACCCTTGATGGATCGTGGAATGAATGTCCAGCTCGGTAGGGGGGAAGATACTGTGTCGATTGATAACTTGATGCTAGAGGGAATTGGATTGGCTTCTTCTGGTTCAATCAAGTTAGGGCTGGGAGATTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCGGCAATGTATGATTATATGACGGTGTATGCGTGCTATCTTGCTATCATTGCGGGTCTTGGCATAACCTTGATGCTTTTGGCTTTTTATCAGAAAGCTTTGCCTGCTCTTCCCGTGTCAGTCGGAATGGGCGTGTTGTTTTATTTCTTGACCAGGCTTTTACTTGAAGTATTTGTAGTACAATGTTCCTTAAATCTCCTGTTGTTCTAA 1374 0.4651 MAQTQTQRPCSSVLDSLGEEIVRIVAPVSICMFLVVILVSILNTDSSLFVASMSMVTIAYNETTSDSTWDKFLGALLNSLAFVVLVTFATFVLVLLFYFRCTRFLKLYMAFSTFIVLLFLGGEVSIFLIQKFSTPIDCITFFLVLCNFAVVGVLTVFISKMAILVTQGYLVVVGILVAYSFTMLPEWTTWALLVAMALYDLAAVLLPIGPLRILVELAISRDEEIPALVYEARPVKHGSLDPREVAQRRLWRERRVQSLNANNSVLAHGPNNAESHSDSGANAGDNWDGANLVRENASLNSNLNADSSGGSYGYGNLVSVEEGWLRVQETDSDLSAPLMDRGMNVQLGRGEDTVSIDNLMLEGIGLASSGSIKLGLGDFIFYSVLVGRAAMYDYMTVYACYLAIIAGLGITLMLLAFYQKALPALPVSVGMGVLFYFLTRLLLEVFVVQCSLNLLLF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00741 457 MobiDBLite consensus disorder prediction 263 284 - -
Gma17g00741 457 Gene3D Presenilin 365 449 IPR042524 -
Gma17g00741 457 PRINTS Presenilin family signature 25 35 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma17g00741 457 PRINTS Presenilin family signature 183 190 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma17g00741 457 PRINTS Presenilin family signature 200 217 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma17g00741 457 MobiDBLite consensus disorder prediction 263 287 - -
Gma17g00741 457 PANTHER PRESENILIN 11 457 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma17g00741 457 Pfam Presenilin 18 447 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma17g00741 457 PANTHER PRESENILIN 11 457 - -
Gma17g00741 457 SMART psh_8 73 443 IPR006639 GO:0004190|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00741 Gma-Chr17 6255116 6256664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00741 5 457 Miscellaneous Gene Families AT2G29900 58.150 3.80e-154 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00741 K04505 - gmx:100799643 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00741 17 6255116 6256664 Gma17g00741 17 6255116 6256664 ECH
Gma17g00741 17 6255116 6256664 Gma05g00202 05 1888215 1889585 GST