Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00202 ATGGCAGAAACACAAACCCAGAGACCCTGTTCAAGCGTCCTCGATTCTCTGGGGGAAGAAATCGTGAGAATCATCGCACCCGTTTCAATATGCATGTTCCTGGTCGTAATCCTGGTCTCAACTCTCAACACCGATTCTTCTCTCTTCGACGCATCGATGAGCATGGTCACCATCGCGTACAACGAAACAACCTCGGACTCCACCTGGGACAAGTTCCTAGGAGCCCTTCTGAACTCCTTAGCCTTCGTCATCCTCGTCACCTTCGCAACCTTCGTCTTGGTCCTCCTCTTCTACTTCCGATGCACCAGGTTCTTAAAACTCTACATGGCTTTCTCCACTTTCATCGTGCTGCTATTCCTCGGCGGCGAAGTCTCGATCTTCTTGATCCAAAAGTTTAGTACTCCCATTGATTGCATCACGTTCTTCCTTGTTCTGTGTAATTTCGCTGTTGTGGGTGTTTTGACTGTGTTTATTTCGAAAATGGCGATTCTTGTGACGCAGGGGTATTTGGTTGTTGTTGGGATATTGGTTGCTTATTCGTTTACTATGTTGCCTGAGTGGACCACGTGGGCCCTGCTTGTTGCTATGGCGTTGTATGATCTTGCTGCGGTTTTGTTGCCAATTGGACCGTTAAGGCTTTTGGTAGAGCTTGCAATTTCAAGGGATGAGGAAATTCCGGCATTGGTTTATGAGGCTAGGCCAGTGAACCATGGTAGTTTGGATCCTATGGAAGTCACGCAGAGGCGGTTGTGGAGAGAAAGGAGGGTTCAGAATTTGAATGCTAATTCAGTGTTGGCTCATGGCCCCGACAATGTTGAATCGCACGCTGATTCGGGTGCAAGCGCTGGCTATAACCGGGATGGCGCAGACTTGGTTAGGGAAAACGCTTCTTTGAATTCAATTTTGAATGCTGATAGTTCTGGTGGCTCCAATGGTTATGGAAATTTGGTGAGTGTGGAAGAGGGACGGGTGCGAGTTCAAGAGACTGGTTCGGACCTTTCTGCACCCTTGATTGATCGTGGAATGAATGTCCAGCTTGGTAGGGGAGAAGATGCTGCGTCAATTGAAAACTTGATGCTAGAGGGAATTGGATTGGGTTCTTCCGGTTCAATCAAGTTAGGGCTGGGAGATTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCGGCAATGTATGATTATATGACGGTGTATGCATGTTATCTTGCTATCATTGCGGGTCTTGGCATAACTTTGATGCTTTTGGCTTTTTATCAGAAAGCTTTGCCTGCTCTTCCTGTGTCAGTGGCAATGGGCGTGCTGTTTTATTTCTTGACCAGGCTTTTACTTGAAGTATTTGTAGTACAATGTTCCTTAAATCTCCTGTTGTTCTAA 1371 0.4661 MAETQTQRPCSSVLDSLGEEIVRIIAPVSICMFLVVILVSTLNTDSSLFDASMSMVTIAYNETTSDSTWDKFLGALLNSLAFVILVTFATFVLVLLFYFRCTRFLKLYMAFSTFIVLLFLGGEVSIFLIQKFSTPIDCITFFLVLCNFAVVGVLTVFISKMAILVTQGYLVVVGILVAYSFTMLPEWTTWALLVAMALYDLAAVLLPIGPLRLLVELAISRDEEIPALVYEARPVNHGSLDPMEVTQRRLWRERRVQNLNANSVLAHGPDNVESHADSGASAGYNRDGADLVRENASLNSILNADSSGGSNGYGNLVSVEEGRVRVQETGSDLSAPLIDRGMNVQLGRGEDAASIENLMLEGIGLGSSGSIKLGLGDFIFYSVLVGRAAMYDYMTVYACYLAIIAGLGITLMLLAFYQKALPALPVSVAMGVLFYFLTRLLLEVFVVQCSLNLLLF 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00202 456 SMART psh_8 73 442 IPR006639 GO:0004190|GO:0016021
Gma05g00202 456 PANTHER PRESENILIN 11 456 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma05g00202 456 Gene3D Presenilin 364 448 IPR042524 -
Gma05g00202 456 PANTHER PRESENILIN 11 456 - -
Gma05g00202 456 Pfam Presenilin 18 446 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma05g00202 456 PRINTS Presenilin family signature 25 35 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma05g00202 456 PRINTS Presenilin family signature 183 190 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma05g00202 456 PRINTS Presenilin family signature 200 217 IPR001108 GO:0004190|GO:0016021|GO:0016485
Gma05g00202 456 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00202 Gma-Chr5 1888215 1889585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00202 11 456 Miscellaneous Gene Families AT1G08700 46.751 1.75e-122 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00202 K04505 - gmx:100780823 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00202 05 1888215 1889585 Gma05g00202 05 1888215 1889585 ECH
Gma17g00741 17 6255116 6256664 Gma05g00202 05 1888215 1889585 GST