Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00575 ATGTCCATTTCTATGAGAGATCTGGATCCAGCTTTTAAGGGAGCTGGACAAAAGGCCGGATTGGAAATATGGCGTATTGAGAATTTTAATCCAGTTCCCATCCCTCAGTCATCTTATGGAAAGTTTTTCACTGGGGACTCCTATGTGATCTTGAAGACAACTGCTTCAAAAAGTGGTGCTCTTCGTCATGATATCCATTATTGGCTTGGTAAAGACACCAGTCAGGATGAAGCTGGTGCTGCAGCCATCAAGACAGTCGAGTTGGATGCATCTTTAGGAGGACGGGCTGTTCAGTATCGTGAAGTACAAGGTCATGAAACTGAAAAGTTCCTCTCTTATTTCAAACCATGTATCATACCTCAAGAAGGTGGAGCTGCCTCAGGTTTTAAACATGTTGAGGCTGAAGAACATAAGACACGGTTGTTTGTGTGCAAAGGGAAACATGTAGTGCATATTACTTTCGCTCGATCTTCACTGAACCATGATGATATTTTTATTCTGGATACCAAGTCCAAAATCTTCCAATTTAATGGTTCCAATTCAAGTATTCAAGAAAGGGCTAAAGCATTGGAAGTTGTACAGTATGTCAAGGATACCTACCATGATGGGAAATGTGAGATAGCTTCTATTGAGGATGGAAAGTTGATGGCTGATTCTGAAAGTGGAGAATTCTGGGGTTGCTTTGGGGGCTTTGCTCCTCTTCCACGGAGAACAGTCAGTGATGATGACAAGCCTGCTGATTCTCATCCTCCAAAGCTACTTTGTGTTGACAAGGGGAAGGCAGAACCTATTGAAACCGATTCTTTGACAAAGGAATTTCTGGACACAAACAAATGTTATATTCTAGATTGTGGGTTGGAAGTTTTTGCATGGATGGGAAGAAACACATCTCTTGATGAAAGAAAAAGTGCAAGTGTAGCAGCAGATGAGTTAATCAGGGGCACTGGTCGACCAAAGTCCCATATAATTCGTGTAATTGAAGGATTTGAAACAGTAATGTTCAAGTCCAAGTTTGATTCTTGGCCTCAGGCAAGTGATGCACCAATGTCTGAAGAAGGTCGTGGCAAGGTAGCAGCACTTCTAAAACGTCAAGGATTGGATGTCAAGGGTCTCGTGAAATCTGAGCCCAAACAAGAAGAACCTCAACCCCACATAGATTGCACAGGACATTTGCAGGTAGTTTGGCGTGTGAATGGTCAGGAAAAGATTCTTCTTCCAGCCACTGATCAGTCAAAATTTTATAATGGAGATTGCTACATCTTTCAATATTCATATCCTGGAGAAGATAAGGAAGAGCATCTTATAGGAACATGGATTGGAAAGACTAGTGTTGAGGAAGAGAGAGCTTCAGCTCTTTCACTAGCAAGCAAGATGGTTGAGTCAATGAAGTTTCTTCCTTCCCAAGCTCGTATCTATGAAGGCAGTGAACCAATTCAATTTCATGCCATCCTGCAAAGCTGTATTGTTTTTAAGGGTGGACTTAGTGATGGATACAAGAATTACATTGCGGAGAAGGAAATTCCAGATGAGACATACAATGAGGATGGTGTTGCATTATTCCGCATCCAGGGCACTGGACCAGACAATATGCAAGCTATACAAGTTGAACCAGTTGCTTCCTCCTTGAATTCCACTTATTGCTACATACTTCATAGCGGACCCACTGTTTTTATTTGGTCTGGAGGTTTAGCAACTTCAGATGACCAGGAGCTTGTTGAGAGAATGCTGGATTTGATTAAGCCGGATGTACAATGCAAACCACTAAAGGAAGGCGTAGAATCGGAACAGTTTTGGGATTTGTTGGGGGGAAAAACAGAATATCCCAGTCAAAAGATCACGAGGGATGCTGAAAATGATCCTCACTTATTTTCTTGCAACTTCTCAGAAGagattcacaacttttcccaggatgatttgatgacagaagATATTTACATCTTGGATTGTCACTCGGAAGTCTTTGTCTGGGTTGGCCAGCAGGTTGACTCAAAGAATAGAATGCAGGCTCTAACAATTGGCGAGAAATTTCTTGAGCATGATTTTCTCCTAGAAGCATTATCTCGTGAAGCTCCAATATATATTGTCAAAGAAGGTAGTGAGCCACCTTTCTTCACTCGCTTCTTTAAATGGGAGTCTGCAAAATCTGCAATGCTAGGAAACTCATTTCAAAGGAAGCTTGCAATCGTGAAAAATGGGGGTATGCCACTTATCGTTAAACATAAACGAAGAGCATCAGCAACTTTTGGGGGAAGGTCTAGTGGTGCACCAGATAAATCCCAGCGTTCCCGCAGCATGTCTGTCAGTCCTGATCGTGTTCGTGTGAGGGGCAGATCTCCAGCCTTTAATGCACTAGCAGCTAATTTTGAGAGCTCAAATGCTAGGAACCTTTCAACTCCACCTCCAATGATTAGAAAACTGTACCCAAAATCTGTGGCAAAGGATACAGCACAACTGGTACCTAAATCTTCAGCCATAGCTCATCTTACTTCTAGTTTTGAACCATTCTCAGCGCTAGAAAATTTGATTCCTCAGTCACAAAAAGCGAATTCAGTTACCCCCAAATCAAACCCTGAGACAAGTGACAAGGAGGGTTCTATGAGCAGTAGGATAGAATCTCTTACCATTCAGGAGGATGTGAAAGAGGGAGAAGCTGAAGATGATGAAGGTCTCCCAGTTTACCCATATGAACGTGTAAACACAGCTTCTACAGATCCTGTAGAAGATATTGACGTGACTAAACGAGAGGCTTATCTGTCATCTGCAGAGTTCCAAGAGAAATTTGGGACGGCAAAGAATGAATTTTATAAGTTGCCAAAATGGAAACAAAACAAACTCAAAATGGCAGTTCAGTTGTTCTGA 2859 0.4148 MSISMRDLDPAFKGAGQKAGLEIWRIENFNPVPIPQSSYGKFFTGDSYVILKTTASKSGALRHDIHYWLGKDTSQDEAGAAAIKTVELDASLGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGAASGFKHVEAEEHKTRLFVCKGKHVVHITFARSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVVQYVKDTYHDGKCEIASIEDGKLMADSESGEFWGCFGGFAPLPRRTVSDDDKPADSHPPKLLCVDKGKAEPIETDSLTKEFLDTNKCYILDCGLEVFAWMGRNTSLDERKSASVAADELIRGTGRPKSHIIRVIEGFETVMFKSKFDSWPQASDAPMSEEGRGKVAALLKRQGLDVKGLVKSEPKQEEPQPHIDCTGHLQVVWRVNGQEKILLPATDQSKFYNGDCYIFQYSYPGEDKEEHLIGTWIGKTSVEEERASALSLASKMVESMKFLPSQARIYEGSEPIQFHAILQSCIVFKGGLSDGYKNYIAEKEIPDETYNEDGVALFRIQGTGPDNMQAIQVEPVASSLNSTYCYILHSGPTVFIWSGGLATSDDQELVERMLDLIKPDVQCKPLKEGVESEQFWDLLGGKTEYPSQKITRDAENDPHLFSCNFSEEIHNFSQDDLMTEDIYILDCHSEVFVWVGQQVDSKNRMQALTIGEKFLEHDFLLEALSREAPIYIVKEGSEPPFFTRFFKWESAKSAMLGNSFQRKLAIVKNGGMPLIVKHKRRASATFGGRSSGAPDKSQRSRSMSVSPDRVRVRGRSPAFNALAANFESSNARNLSTPPPMIRKLYPKSVAKDTAQLVPKSSAIAHLTSSFEPFSALENLIPQSQKANSVTPKSNPETSDKEGSMSSRIESLTIQEDVKEGEAEDDEGLPVYPYERVNTASTDPVEDIDVTKREAYLSSAEFQEKFGTAKNEFYKLPKWKQNKLKMAVQLF 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00575 952 SMART VILL_6 390 487 IPR007122 GO:0051015
Gma17g00575 952 SMART VILL_6 19 117 IPR007122 GO:0051015
Gma17g00575 952 SMART VILL_6 620 711 IPR007122 GO:0051015
Gma17g00575 952 SMART VILL_6 137 231 IPR007122 GO:0051015
Gma17g00575 952 SMART VILL_6 251 341 IPR007122 GO:0051015
Gma17g00575 952 SMART VILL_6 517 604 IPR007122 GO:0051015
Gma17g00575 952 PANTHER VILLIN-4 1 952 - -
Gma17g00575 952 MobiDBLite consensus disorder prediction 844 873 - -
Gma17g00575 952 ProSiteProfiles Headpiece (HP) domain profile. 887 952 IPR003128 GO:0003779|GO:0007010
Gma17g00575 952 Pfam Gelsolin repeat 153 213 IPR007123 -
Gma17g00575 952 Pfam Gelsolin repeat 630 704 IPR007123 -
Gma17g00575 952 Pfam Gelsolin repeat 266 334 IPR007123 -
Gma17g00575 952 Pfam Gelsolin repeat 28 111 IPR007123 -
Gma17g00575 952 MobiDBLite consensus disorder prediction 752 767 - -
Gma17g00575 952 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Gma17g00575 952 SMART VHP_1 917 952 IPR003128 GO:0003779|GO:0007010
Gma17g00575 952 SUPERFAMILY Actin depolymerizing proteins 383 526 - -
Gma17g00575 952 MobiDBLite consensus disorder prediction 844 886 - -
Gma17g00575 952 Gene3D Villin headpiece domain 890 952 IPR036886 GO:0003779|GO:0007010
Gma17g00575 952 PRINTS Gelsolin family signature 467 487 IPR007122 GO:0051015
Gma17g00575 952 PRINTS Gelsolin family signature 636 658 IPR007122 GO:0051015
Gma17g00575 952 PRINTS Gelsolin family signature 320 341 IPR007122 GO:0051015
Gma17g00575 952 PRINTS Gelsolin family signature 590 609 IPR007122 GO:0051015
Gma17g00575 952 PRINTS Gelsolin family signature 665 684 IPR007122 GO:0051015
Gma17g00575 952 PRINTS Gelsolin family signature 530 550 IPR007122 GO:0051015
Gma17g00575 952 PRINTS Gelsolin family signature 409 425 IPR007122 GO:0051015
Gma17g00575 952 PRINTS Gelsolin family signature 434 452 IPR007122 GO:0051015
Gma17g00575 952 CDD gelsolin_S4_like 385 483 - -
Gma17g00575 952 CDD gelsolin_S6_like 619 710 - -
Gma17g00575 952 Gene3D Severin 133 243 IPR029006 -
Gma17g00575 952 Gene3D Severin 7 132 IPR029006 -
Gma17g00575 952 CDD gelsolin_S5_like 515 606 - -
Gma17g00575 952 CDD gelsolin_S2_like 138 229 - -
Gma17g00575 952 MobiDBLite consensus disorder prediction 745 773 - -
Gma17g00575 952 Gene3D Severin 385 518 IPR029006 -
Gma17g00575 952 Pfam Villin headpiece domain 917 952 IPR003128 GO:0003779|GO:0007010
Gma17g00575 952 CDD gelsolin_S3_like 251 340 - -
Gma17g00575 952 PANTHER VILLIN 1 952 IPR007122 GO:0051015
Gma17g00575 952 SUPERFAMILY Actin depolymerizing proteins 135 239 - -
Gma17g00575 952 Gene3D Severin 244 353 IPR029006 -
Gma17g00575 952 Gene3D Severin 611 726 IPR029006 -
Gma17g00575 952 SUPERFAMILY Actin depolymerizing proteins 509 613 - -
Gma17g00575 952 CDD gelsolin_S1_like 12 124 - -
Gma17g00575 952 SUPERFAMILY Actin depolymerizing proteins 593 709 - -
Gma17g00575 952 SUPERFAMILY VHP, Villin headpiece domain 877 952 IPR036886 GO:0003779|GO:0007010
Gma17g00575 952 SUPERFAMILY Actin depolymerizing proteins 220 343 - -
Gma17g00575 952 Gene3D Severin 519 610 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00575 Gma-Chr17 4756832 4766272 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00575 - - gmx:100798962 1902.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00575 17 4756832 4766272 Gma13g00790 13 22160943 22170031 GST
Gma17g00575 17 4756832 4766272 Gma15g01913 15 25692423 25695387 PCT
Gma15g01523 15 14227812 14238425 Gma17g00575 17 4756832 4766272 PCT
Gma09g00515 09 5299593 5319640 Gma17g00575 17 4756832 4766272 PCT