Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00480 ATGAGTTTCATCTTTGGAAAGAGGAAAACTCCTGCAGAACTTTTGCGGGAAAATAAGAGAATGCTGGACAAATCAATTAGAGAAATAGATCGAGAGAGACAAGGTTTGCAGTCACAGGAGAAGAAACTGATATTGGAGATAAAGAAAAGTGCCAAACAAGGCCAGATGGGAGCTGTTAAAGTGATGGCAAAAGATCTTGTTAGAACAAAGCATCAGATTGAAAAGTTTTATAAGCTCAAATCACAGCTCCAGGGTGTATCCCTCAGAATTCAAACTTTGAAATCAACACAAGCAATGGGGGAGGCAATGAAAGGTGTGACTAAGGCAATGGGACATATGAATAGGCAGATGAACTTGCCATCATTGCAGAAAATCTTACAAGAATTTGAGACACAGAATGAGAGGATGGAATTGATTACAGAGGTGATGGGAGATGCAATAGATGATGCTTTGGAAGGGGATGAGGAAGAAGAAGAAACAGAAGACCTAGTGAACCAGGTTCTTGATGAGATTGGAATTGACATAAACCAAGAGCTTTTGAGTGCACCATCAACTGCAGTTGCTGCCTCAGCTGCAAAGACTAAGGTGCCTCAAGTTGAAACTGTTGGGAATGATGATGCCACGATAGATAGCAATTTGCAGGCAAGGTTAGACAATTTAAGAAAAATGTAA 672 0.4033 MSFIFGKRKTPAELLRENKRMLDKSIREIDRERQGLQSQEKKLILEIKKSAKQGQMGAVKVMAKDLVRTKHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGHMNRQMNLPSLQKILQEFETQNERMELITEVMGDAIDDALEGDEEEEETEDLVNQVLDEIGIDINQELLSAPSTAVAASAAKTKVPQVETVGNDDATIDSNLQARLDNLRKM 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00480 223 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 1-LIKE 1 223 - -
Gma17g00480 223 Pfam Snf7 17 186 IPR005024 GO:0007034
Gma17g00480 223 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 1 223 IPR005024 GO:0007034
Gma17g00480 223 Coils Coil 12 46 - -
Gma17g00480 223 Gene3D - 6 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00480 Gma-Chr17 3951354 3953876 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00480 K12191 - gmx:100819241 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00480 17 3951354 3953876 Gma17g00480 17 3951354 3953876 ECH
Gma17g00480 17 3951354 3953876 Gma13g00886 13 23074112 23076788 GST
Gma17g00480 17 3951354 3953876 Gma15g01625 15 16149148 16154327 PCT
Gma15g01625 15 16149148 16154327 Gma17g00480 17 3951354 3953876 PCT